Some participants sometimes don't create the salmon_outputs directory from the first session and this then breaks the saveRDS in Data Exploration section.
We can replace this line of code with:
# create directory if it doesn't exist
dir.create("salmon_outputs", showWarnings = FALSE)
# save txi object
saveRDS(txi, file = "salmon_outputs/txi.rds")
(sorry I don't have the data handy to push the fix quickly)
Some participants sometimes don't create the
salmon_outputsdirectory from the first session and this then breaks thesaveRDSin Data Exploration section.We can replace this line of code with:
(sorry I don't have the data handy to push the fix quickly)