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nagutmbgyori
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Add prefix: phagedive (#1454)
This PR curates a new prefix: `phagedive`. PubMed: https://pubmed.ncbi.nlm.nih.gov/39373542/ Database: https://phagedive.dsmz.de/ It is a database of bacteriophages and archaeal viruses and provides details regarding their taxonomy, host strain, phage morphology, life cycle, origin and genomic data. --------- Co-authored-by: Ben Gyori <ben.gyori@gmail.com>
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src/bioregistry/data/bioregistry.json

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"Progenetix"
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]
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},
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"phagedive": {
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"contact": {
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"email": "johannes.wittmann@dsmz.de",
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"name": "Johannes Wittmann",
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"orcid": "0000-0002-7275-9927"
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},
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"contributor": {
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"email": "m.naguthana@hotmail.com",
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"github": "nagutm",
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"name": "Mufaddal Naguthanawala",
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"orcid": "0009-0009-5240-7463"
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},
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"description": "PhageDive is a database for bacteriophages and archaeal viruses. It provides information regarding taxonomy, host strain, phage morphology, life cycle, origin and genomic data.",
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"example": "3",
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"github_request_issue": 1454,
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"homepage": "https://phagedive.dsmz.de",
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"name": "PhageDive",
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"pattern": "^\\d+$",
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"publications": [
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{
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"doi": "10.1093/nar/gkae1220",
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"pmc": "PMC11701545",
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"pubmed": "39373542",
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"title": "PhageDive: the comprehensive strain database of prokaryotic viral diversity",
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"year": 2024
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}
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],
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"reviewer": {
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"email": "b.gyori@northeastern.edu",
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"github": "bgyori",
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"name": "Benjamin M. Gyori",
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"orcid": "0000-0001-9439-5346"
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},
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"uri_format": "https://phagedive.dsmz.de/strain/$1"
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},
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"pharmacodb.cell": {
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"cellosaurus": {
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"category": "Chemistry resources",

src/bioregistry/data/curated_papers.tsv

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39341994 0 0009-0009-5240-7463 2024-10-15 not_identifiers_resource 1223
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39345624 1 0009-0009-5240-7463 2024-10-19 new_publication 1223 Publication for sgd and sgd.pathways
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39373530 1 0009-0009-5240-7463 2025-02-15 new_prefix 1418
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39373542 1 0009-0009-5240-7463 2025-03-09 new_prefix 1454
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39379619 1 0009-0009-5240-7463 2024-11-26 new_provider 1285 Provider for UniProt
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39399372 0 0009-0009-5240-7463 2024-11-19 irrelevant_other 1288
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39401100 1 0009-0009-5240-7463 2024-11-20 new_publication 1264 Publication for intact and intact.molecule

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