Add additional tests for subset definitions

Author: cthoyt

pyproject.toml

@@ -77,7 +77,7 @@ dependencies = [
     "class_resolver>=0.6.0",
     "pydantic>=2.0",
     "curies>=0.10.17",
-    "curies-processing>=0.1.2",
+    "curies-processing>=0.1.6",
     "python-dateutil",
     "networkx>=3.4",
     # Resource Downloaders

tests/test_obo_reader/test_reader.py

@@ -315,6 +315,18 @@ def test_8_subset(self) -> None:
         self.assertEqual(1, len(term.subsets))
         self.assertEqual(default_reference("go", "TESTSET"), term.subsets[0])
 
+    def test_8_subset_blocked(self) -> None:
+        """Test parsing subsets that are blocked."""
+        ontology = from_str("""\
+            ontology: chebi
+
+            [Term]
+            id: CHEBI:10
+            subset: 2:STAR
+        """)
+        term = self.get_only_term(ontology)
+        self.assertEqual(0, len(term.subsets))
+
     def test_9_synonym_minimal(self) -> None:
         """Test parsing a synonym just the text."""
         ontology = from_str("""\

tests/test_obo_reader/test_reader_ontology.py

@@ -79,6 +79,30 @@ def test_7_subset(self) -> None:
             ontology.subsetdefs,
         )
 
+    def test_7_curie(self) -> None:
+        """Test parsing a subset definition that is a CURIE."""
+        ontology = from_str("""\
+            ontology: chebi
+            subsetdef: obo:test "name"
+        """)
+        self.assertEqual([(Reference.from_curie("obo:test"), "name")], ontology.subsetdefs)
+
+    def test_7_blocked_curie(self) -> None:
+        """Test parsing a subset definition that is explicitly blocked."""
+        ontology = from_str("""\
+            ontology: chebi
+            subsetdef: 1:STAR "Preliminary entries"
+        """)
+        self.assertEqual([], ontology.subsetdefs)
+
+    def test_7_uri(self) -> None:
+        """Test parsing a subset definition that is a URI."""
+        ontology = from_str("""\
+            ontology: chebi
+            subsetdef: http://purl.obolibrary.org/obo/chebi#TEST "name"
+        """)
+        self.assertEqual([(default_reference("chebi", "TEST"), "name")], ontology.subsetdefs)
+
     def test_8_synonym_typedef(self) -> None:
         """Test the ``synonym_typedef`` tag."""
         with self.assertRaises(ValueError):