Reorg

Author: cthoyt

src/pyobo/struct/jskos/__init__.py

@@ -0,0 +1,7 @@
+"""JSKOS."""
+
+from .reader import read_jskos
+
+__all__ = [
+    "read_jskos",
+]

src/pyobo/struct/jskos/demo.py

@@ -0,0 +1,14 @@
+"""Demo JSKOS."""
+
+from pyobo.struct.jskos import read_jskos
+from tqdm import tqdm
+
+
+def _demo() -> None:
+    url = "https://oer-repo.uibk.ac.at/w3id.org/vocabs/oefos2012/schema.json"
+    o = read_jskos(url, prefix="oefos")
+    tqdm.write(str(o))
+
+
+if __name__ == "__main__":
+    _demo()

src/pyobo/struct/jskos_utils.py src/pyobo/struct/jskos/reader.pysrc/pyobo/struct/jskos_utils.py renamed to src/pyobo/struct/jskos/reader.py

@@ -7,9 +7,9 @@
 import curies
 import jskos
 from jskos import ProcessedConcept, ProcessedKOS
-from tqdm import tqdm
 
 from pyobo.struct import Obo, build_ontology
+from ...identifier_utils import get_converter
 
 __all__ = [
     "from_pkos",
@@ -20,8 +20,6 @@
 def read_jskos(path: str | Path, *, prefix: str, converter: curies.Converter | None = None) -> Obo:
     """Read JSKOS into an ontology."""
     if converter is None:
-        from ..identifier_utils import get_converter
-
         converter = get_converter()
     pkos = jskos.read(path).process(converter)
     return from_pkos(prefix=prefix, pkos=pkos)
@@ -47,9 +45,3 @@ def _iterate_concepts_inner(concept: ProcessedConcept):
         yield from _iterate_concepts_inner(broader)
     for _mapping in concept.mappings:
         raise NotImplementedError
-
-
-if __name__ == "__main__":
-    url = "https://oer-repo.uibk.ac.at/w3id.org/vocabs/oefos2012/schema.json"
-    o = read_jskos(url, prefix="oefos")
-    tqdm.write(str(o))