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fix: use glob for parse_kraken2_reads output to avoid interpolation i… viral-pipelines CI #3851: Commit f5590ba pushed by carze
25m 51s ca-kb_python
ca-kb_python
25m 51s
feat: integrate parse_centrifuger_reads into centrifuger workflows viral-pipelines CI #3850: Commit e6d27c7 pushed by carze
25m 5s ca-kb_python
ca-kb_python
25m 5s
fix: use string concatenation for out_filename/out_compressed in pars… viral-pipelines CI #3849: Commit 22b9c8c pushed by carze
31m 41s ca-kb_python
ca-kb_python
31m 41s
fix: derive output filename from input sample ID in summarize_kb_extr… viral-pipelines CI #3848: Commit 6252ef7 pushed by carze
4m 53s ca-kb_python
ca-kb_python
4m 53s
chore: tweak workflow output names to use _classified suffix viral-pipelines CI #3847: Commit c27e0ab pushed by carze
5m 7s ca-kb_python
ca-kb_python
5m 7s
chore: rename workflow outputs for Terra table column naming viral-pipelines CI #3846: Commit 0a7f99b pushed by carze
2m 15s ca-kb_python
ca-kb_python
2m 15s
fix: enable multi-threaded zstd decompression in centrifuger task viral-pipelines CI #3845: Commit cdc9958 pushed by carze
27m 13s ca-kb_python
ca-kb_python
27m 13s
fix: remove invalid READ1_SUFFIX/READ2_SUFFIX params from picard SamT… viral-pipelines CI #3844: Commit 4792479 pushed by carze
14m 15s ca-kb_python
ca-kb_python
14m 15s
fix: stream zstd writes and raise memory in parse_kraken2_reads viral-pipelines CI #3843: Commit b98195e pushed by carze
22m 57s ca-kb_python
ca-kb_python
22m 57s
fix: add GB unit to size() calls in parse_kraken2_reads disk formula viral-pipelines CI #3842: Commit 9f3d1d9 pushed by carze
26m 46s ca-kb_python
ca-kb_python
26m 46s
chore: bump viral-ngs to 3.0.11 across all remaining task files viral-pipelines CI #3841: Commit c3e7209 pushed by carze
27m 10s ca-kb_python
ca-kb_python
27m 10s
Add Kallisto and VirNucPro WDL pipelines viral-pipelines CI #3840: Pull request #632 synchronize by carze
26m 34s ca-kb_python
ca-kb_python
26m 34s
fix: use machine_mem_gb variable and mem1 instance types in new metag… viral-pipelines CI #3839: Commit 4dc7ec3 pushed by carze
1m 44s ca-kb_python
ca-kb_python
1m 44s
Add Kallisto and VirNucPro WDL pipelines viral-pipelines CI #3838: Pull request #632 synchronize by carze
25m 45s ca-kb_python
ca-kb_python
25m 45s
fix: bump viral-ngs to 3.0.11 to match master requirements-modules.txt viral-pipelines CI #3837: Commit 5134809 pushed by carze
2m 3s ca-kb_python
ca-kb_python
2m 3s
Add Kallisto and VirNucPro WDL pipelines viral-pipelines CI #3836: Pull request #632 synchronize by carze
1m 43s ca-kb_python
ca-kb_python
1m 43s
fix: revert viral-ngs docker tags back to 3.0.10 to match requirement… viral-pipelines CI #3835: Commit 3fd20b9 pushed by carze
2m 49s ca-kb_python
ca-kb_python
2m 49s
Add Kallisto and VirNucPro WDL pipelines viral-pipelines CI #3834: Pull request #632 synchronize by carze
26m 55s ca-kb_python
ca-kb_python
26m 55s
chore: bump py3-bio to 0.1.5, viral-ngs to 3.0.11, disable placeholde… viral-pipelines CI #3833: Commit 7333147 pushed by carze
1m 37s ca-kb_python
ca-kb_python
1m 37s
Add Kallisto and VirNucPro WDL pipelines viral-pipelines CI #3832: Pull request #632 synchronize by carze
1m 35s ca-kb_python
ca-kb_python
1m 35s
feat: add classify_virnucpro_contigs, classify_reads_by_contig, parse… viral-pipelines CI #3831: Commit 3993a87 pushed by carze
26m 19s ca-kb_python
ca-kb_python
26m 19s
Add Kallisto and VirNucPro WDL pipelines viral-pipelines CI #3830: Pull request #632 synchronize by carze
1m 41s ca-kb_python
ca-kb_python
1m 41s
fix: revert tar.zst patterns from parameter_meta to avoid miniwdl loc… viral-pipelines CI #3829: Commit 627f80d pushed by carze
1m 51s ca-kb_python
ca-kb_python
1m 51s
Add Kallisto and VirNucPro WDL pipelines viral-pipelines CI #3828: Pull request #632 synchronize by carze
1m 40s ca-kb_python
ca-kb_python
1m 40s
feat: add tar.zst/tar.gz tarball support to classify_virnucpro_contigs viral-pipelines CI #3827: Commit 31b9c96 pushed by carze
1m 42s ca-kb_python
ca-kb_python
1m 42s