Merge pull request #33 from broadinstitute/dp-hanta #7
Workflow file for this run
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| name: Validate VADR Table | |
| on: | |
| push: | |
| paths: | |
| - 'annotation/vadr/vadr-by-taxid.tsv' | |
| pull_request: | |
| paths: | |
| - 'annotation/vadr/vadr-by-taxid.tsv' | |
| workflow_dispatch: | |
| permissions: | |
| contents: read | |
| jobs: | |
| validate: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout repository | |
| uses: actions/checkout@v4 | |
| - name: Set up Python | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: '3.11' | |
| - name: Install dependencies | |
| run: | | |
| python -m pip install --upgrade pip | |
| pip install requests | |
| - name: Validate TSV structure | |
| run: | | |
| python .github/scripts/validate_tsv_structure.py annotation/vadr/vadr-by-taxid.tsv | |
| - name: Validate VADR models | |
| run: | | |
| python .github/scripts/validate_vadr_models.py annotation/vadr/vadr-by-taxid.tsv |