@@ -5,6 +5,10 @@ tax_id taxon_name min_seq_len max_seq_len vadr_min_ram_gb vadr_opts vadr_model_t
553052464 Dengue virus 12000 8 --mkey flavi --group Dengue --nomisc --noprotid https://ftp.ncbi.nlm.nih.gov/pub/nawrocki/vadr-models/flaviviridae/1.2-1/vadr-models-flavi-1.2-1.tar.gz
6611050 Flaviviridae 14000 --mkey flavi --nomisc --noprotid https://ftp.ncbi.nlm.nih.gov/pub/nawrocki/vadr-models/flaviviridae/1.2-1/vadr-models-flavi-1.2-1.tar.gz
772697049 SARS-CoV-2 32000 8 --mkey sarscov2 --glsearch -s -r --nomisc --lowsim5seq 6 --lowsim3seq 6 --alt_fail lowscore,insertnn,deletinn https://ftp.ncbi.nlm.nih.gov/pub/nawrocki/vadr-models/sarscov2/1.3-2/vadr-models-sarscov2-1.3-2.tar.gz
8+ 11137 HCoV-229E 33000 --mkey 229E -s --glsearch -r -f https://github.com/greninger-lab/vadr-models-hcov/archive/refs/tags/v1.0.tar.gz 229E
9+ 290028 HCoV-HKU1 33000 --mkey HKU1 -s --glsearch -r -f --alt_pass discontn https://github.com/greninger-lab/vadr-models-hcov/archive/refs/tags/v1.0.tar.gz HKU1
10+ 277944 HCoV-NL63 33000 --mkey NL63 -s --glsearch -r -f https://github.com/greninger-lab/vadr-models-hcov/archive/refs/tags/v1.0.tar.gz NL63
11+ 31631 HCoV-OC43 33000 --mkey OC43 -s --glsearch -r -f --alt_pass discontn https://github.com/greninger-lab/vadr-models-hcov/archive/refs/tags/v1.0.tar.gz OC43
81211118 Coronaviridae 32000 8 --mkey corona --glsearch -s -r --nomisc --lowsim5seq 6 --lowsim3seq 6 --alt_fail lowscore,insertnn,deletinn https://ftp.ncbi.nlm.nih.gov/pub/nawrocki/vadr-models/coronaviridae/1.3-3/vadr-models-corona-1.3-3.tar.gz
9131868215 Orthopneumovirus 16000 16 --mkey rsv --xnocomp -r https://ftp.ncbi.nlm.nih.gov/pub/nawrocki/vadr-models/rsv/1.5-2/vadr-models-rsv-1.5-2.tar.gz
101410244 MPXV 230000 32 --mkey mpxv --glsearch --minimap2 -s -r --nomisc --r_lowsimok --r_lowsimxd 100 --r_lowsimxl 2000 --alt_pass discontn,dupregin --s_overhang 150 https://ftp.ncbi.nlm.nih.gov/pub/nawrocki/vadr-models/mpxv/1.4.2-1/vadr-models-mpxv-1.4.2-1.tar.gz
@@ -15,3 +19,5 @@ tax_id taxon_name min_seq_len max_seq_len vadr_min_ram_gb vadr_opts vadr_model_t
15192560525 HPIV-2 18000 24 --mkey hpiv2 -r https://github.com/greninger-lab/vadr-models-hpiv/archive/refs/tags/v1.0.tar.gz hpiv2
162011216 HPIV-3 18000 24 --mkey hpiv3 -r https://github.com/greninger-lab/vadr-models-hpiv/archive/refs/tags/v1.0.tar.gz hpiv3
172111224 HPIV-4 18000 24 --mkey hpiv4 -r https://github.com/greninger-lab/vadr-models-hpiv/archive/refs/tags/v1.0.tar.gz hpiv4
22+ 11234 MeV 18000 --mkey mev -r --indefclass 0.01 https://github.com/greninger-lab/vadr-models-mev/archive/refs/tags/v1.0.tar.gz mev
23+ 2560602 MuV 18000 --mkey muv -r --indefclass 0.025 https://github.com/greninger-lab/vadr-models-muv/archive/refs/tags/v1.0.tar.gz muv
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