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‎chemlambda-gui/cc-by-4-0.png‎

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‎chemlambda-gui/d3.min.js‎

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‎chemlambda-gui/firstpart_q.txt‎

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<!DOCTYPE html>
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<html>
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<head>
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<title>Chemlambda movies productions presents:</title>
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<!-- <script src="http://d3js.org/d3.v3.min.js" charset="utf-8"></script>
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<script src="http://ajax.googleapis.com/ajax/libs/jquery/1.11.0/jquery.min.js"></script> -->
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<script src="d3.min.js" charset="utf-8"></script>
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<script src="jquery.min.js"></script>
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<style>
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.link line {
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stroke: #696969;
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}
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.link line.separator {
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stroke: #95A5A6;
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stroke-width: 2px;
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}
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.node circle {
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stroke: #95A5A6;
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stroke-width: 1.5px;
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}
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.node text {
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font: 10px sans-serif;
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pointer-events: none;
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}
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</style>
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</head>
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<body style="background-color: rgb(255, 255, 255); color: rgb(255, 255, 255);"
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alink="#ee0000" link="#000250" vlink="#551a8b">
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<!-- <button onclick="addNodes()">Start!</button> -->
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<script>
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var graph;
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function myGraph() {
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// Add and remove elements on the graph object
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this.addNode = function (id, atom, size, colour) {
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nodes.push({"id": id, "atom": atom, "size": size, "colour": colour});
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update();
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};
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this.removeNode = function (id) {
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var i = 0;
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var n = findNode(id);
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while (i < links.length) {
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if ((links[i]['source'] == n) || (links[i]['target'] == n)) {
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links.splice(i, 1);
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}
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else i++;
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}
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nodes.splice(findNodeIndex(id), 1);
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update();
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};
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this.removeLink = function (source, target) {
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for (var i = 0; i < links.length; i++) {
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if (links[i].source.id == source && links[i].target.id == target) {
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links.splice(i, 1);
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break;
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}
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}
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update();
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};
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this.removeallLinks = function () {
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links.splice(0, links.length);
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update();
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};
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this.removeAllNodes = function () {
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nodes.splice(0, links.length);
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update();
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};
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this.addLink = function (source, target, bond) {
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links.push({"source": findNode(source), "target": findNode(target), "bond": bond});
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update();
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};
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var findNode = function (id) {
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for (var i in nodes) {
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if (nodes[i]["id"] === id) return nodes[i];
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}
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;
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};
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var findNodeIndex = function (id) {
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for (var i = 0; i < nodes.length; i++) {
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if (nodes[i].id == id) {
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return i;
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}
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}
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;
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};
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// set up the D3 visualisation in the specified element
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var w = 500,
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h = 500;
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// var radius = d3.scale.sqrt()
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// .range([0, 4]);
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var vis = d3.select("body")
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.append("svg:svg")
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.attr("width", w)
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.attr("height", h)
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.attr("id", "svg")
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.attr("pointer-events", "all")
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.attr("viewBox", "0 0 " + w + " " + h)
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.attr("perserveAspectRatio", "xMinYMid")
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.append('svg:g');
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var force = d3.layout.force();
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var nodes = force.nodes(),
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links = force.links();
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var update = function () {
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var link = vis.selectAll("line")
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.data(links, function (d) {
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return d.source.id + "-" + d.target.id;
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});
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link.enter().append("line")
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.style("stroke-opacity",0.4).style("fill-opacity",0.4)
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.attr("id", function (d) {
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return d.source.id + "-" + d.target.id;
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})
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.attr("stroke-width", function (d) {
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return (d.bond * 2 - 1) * 2 + "px";
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})
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.attr("stroke", "#FFFFFF");
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// #ADD8E6
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link.filter(function(d) { return d.bond > 1; }).append("line")
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// .attr("class", "separator");
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.attr("class", "link");
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// link.append("title")
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// .text(function (d) {
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// return d.value;
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// });
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link.exit().remove();
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var node = vis.selectAll("g.node")
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.data(nodes, function (d) {
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return d.id;
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});
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var nodeEnter = node.enter().append("g")
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.attr("class", "node")
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.call(force.drag);
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nodeEnter.append("svg:circle")
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.style("stroke-opacity",0.4).style("fill-opacity",0.8)
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.attr("r", function(d) { return d.size*2;})
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.attr("id", function (d) {
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return "Node;" + d.id;
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})
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.attr("class", "nodeStrokeClass")
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.attr("fill", function(d) { return d.colour; })
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// .transition()
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// .delay(700000)
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// .attr("r", 2);
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// node.append("text")
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// .attr("dy", ".35em")
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// .attr("dx", function(d) { return (0 - ((12/4) * (d.size + 0.5 )* (d.size + 0.5)) );})
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// // .attr("text-anchor", "middle")
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// .text(function(d) { return d.atom; });
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node.on("dblclick", function(d) { d.fixed = false; });
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node.on("mousedown", function(d) { d.fixed = true; });
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node.exit().remove();
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force.on("tick", function () {
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node.attr("transform", function (d) {
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return "translate(" + d.x + "," + d.y + ")";
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});
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link.attr("x1", function (d) {
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return d.source.x;
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})
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.attr("y1", function (d) {
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return d.source.y;
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})
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.attr("x2", function (d) {
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return d.target.x;
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})
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.attr("y2", function (d) {
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return d.target.y;
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});
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});
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// Restart the force layout.
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force
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// .friction(.01)
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.charge(-20)
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.gravity(.38)
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.linkStrength(8.8)
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.linkDistance( function(d) { return ((d.source.size + d.target.size + 3)/(40*d.bond)); } )
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.size([w, h])
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.start();
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};
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// Make it all go
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update();
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}
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function drawGraph() {
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graph = new myGraph("#svgdiv");
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‎chemlambda-gui/getmoves.sh‎

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#!/bin/sh
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printf "choose a file from the list: \n"
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ls *.html
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printf "> "
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read firstarg
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filename=${firstarg%%.*}
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awk '{ sub(/^[ \t]+/, ""); print }' $firstarg > lista.txh
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awk '/^graph\./{print}' lista.txh > lista2.txh
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rm lista.txh
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awk '{ sub(/\(/,","); print }' lista2.txh > lista3.txh
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rm lista2.txh
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awk '{ sub(/\);/,""); print }' lista3.txh > lista4.txh
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rm lista3.txh
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awk '{ sub(/graph\./,""); print }' lista4.txh > lista5.txh
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rm lista4.txh
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awk -f modifier.awk lista5.txh
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rm lista5.txh
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mv essy.txt universal.js
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‎chemlambda-gui/jquery.min.js‎

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‎chemlambda-gui/lastpart.txt‎

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}
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drawGraph();
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// because of the way the network is created, nodes are created first, and links second,
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// so the lines were on top of the nodes, this just reorders the DOM to put the svg:g on top
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function keepNodesOnTop() {
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$(".nodeStrokeClass").each(function( index ) {
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var gnode = this.parentNode;
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gnode.parentNode.appendChild(gnode);
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});
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}
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function addNodes() {
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d3.select("svg")
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.remove();
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drawGraph();
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}
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</script>
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</body>
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</html>

‎chemlambda-gui/modifier.awk‎

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BEGIN {
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FS =",";
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printf("function commands\(\) \{ var commandsArray = \[") > "essy.txt" ;
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# this variant 07.09.2019
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#
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# used for turning the addNode, etc, commands from a simulation into a js function (array)
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# I started from removing spaces at the beginning
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# awk '{ sub(/^[ \t]+/, ""); print }' bigpred.html > lista.txt
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# awk '/^graph\./{print}' lista.txt > lista2.txt
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# awk '{ sub(/\(/,","); print }' lista2.txt > lista3.txt
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# awk '{ sub(/\);/,""); print }' lista3.txt > lista4.txt
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# awk '{ sub(/graph\./,""); print }' lista4.txt > lista5.txt
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# awk -f modifier.awk lista5.txt
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# mv essy.txt whatever.js
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#
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#
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#
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#
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#
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}
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{
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#
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if ($1 == "removeLink") {
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a="\{c:\"" "rl" "\", a:\{s:" $2 ", t:" $3 "\}\}, \n";
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}
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if ($1 == "addLink") {
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a="\{c:\"" "al" "\", a:\{s:" $2 ", t:" $3 ", b:" $4 "\}\}, \n";
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}
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if ($1 == "removeNode") {
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a="\{c:\"" "rn" "\", a:\{i:" $2 "\}\}, \n";
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}
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if ($1 == "addNode") {
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a="\{c:\"" "an" "\", a:\{i:" $2 ", a:" $3 ", si:" $4 ", co:" $5 "\}\}, \n";
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}
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b=a "";
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printf(b) >> "essy.txt";
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}
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END {
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printf("\{c:\"\" , a:\{i:\"\", a:\"\", si:0, co:\"\" \}\}\]; \n return commandsArray; \n \}") >> "essy.txt";
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}
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