test_multi.config

/*
========================================================================================
    Nextflow config file for running minimal tests
========================================================================================
    Defines input files and everything required to run a fast and simple pipeline test.

    Use as follows:
        nextflow run nf-core/ampliseq -profile test_multi,<docker/singularity> --outdir <OUTDIR>

----------------------------------------------------------------------------------------
*/

process {
    resourceLimits = [
        cpus: 4,
        memory: '15.GB',
        time: '2.h'
    ]
}

params {
    config_profile_name = 'Test profile for multiple sequencing runs'
    config_profile_description = 'Test dataset for multiple sequencing runs to check pipeline function'

    // Input data
    sample_inference = "independent"
    skip_cutadapt = true
    trunclenf = 200
    trunclenr = 150
    skip_dada_quality = true
    dada_ref_taxonomy = "rdp=18"
    skip_dada_addspecies = true
    input = params.pipelines_testdata_base_path + "ampliseq/samplesheets/Samplesheet_multi_v3.tsv"

    skip_phyloseq = true
    skip_tse = true
}