test_single.config

/*
========================================================================================
    Nextflow config file for running minimal tests
========================================================================================
    Defines input files and everything required to run a fast and simple pipeline test.

    Use as follows:
        nextflow run nf-core/ampliseq -profile test_single,<docker/singularity> --outdir <OUTDIR>

----------------------------------------------------------------------------------------
*/

process {
    resourceLimits = [
        cpus: 4,
        memory: '15.GB',
        time: '2.h'
    ]
}

params {
    config_profile_name = 'Test profile for SE reads'
    config_profile_description = 'Minimal test dataset to check pipeline function for single end Illumina sequences'

    // Input data
    primer_fwd = "GTGYCAGCMGCCGCGGTAA"
    primer_rev = "GGACTACNVGGGTWTCTAAT"
    input = params.pipelines_testdata_base_path + "ampliseq/samplesheets/Samplesheet_v3.tsv"
    sequencing_type = "illumina_se"
    dada_ref_taxonomy = "rdp=18"
    cut_dada_ref_taxonomy = true

    dada_assign_chunksize = 250

    skip_qiime = true
}