logoactions/.github/workflows/run-logolink.yaml at main · danielvartan/logoactions · GitHub

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on:
  push:
    paths:
      - models/**
      - setup-netlogo/**
      - test/**

name: run-logolink.yaml
permissions: read-all

jobs:
  run-logolink:
    name: Run experiments with Quarto and logolink
    runs-on: ubuntu-latest
    timeout-minutes: 60
    env:
      GH_TOKEN: ${{ secrets.GITHUB_TOKEN }}
    permissions:
      contents: write
      pages: write
    steps:
      - name: Check out repository
        uses: actions/checkout@v6

      - name: Set up NetLogo
        uses: danielvartan/logoactions/setup-netlogo@v1

      - name: Set up R
        uses: r-lib/actions/setup-r@v2

      - name: Set up Quarto
        uses: quarto-dev/quarto-actions/setup@v2

      - name: Install system dependencies
        if: runner.os == 'Linux'
        run: |
          # Install system dependencies

          sudo apt-get update -qq

          sudo apt-get install -y -qq \
            libfontconfig1-dev \
            pandoc
        shell: bash

      - name: Install R dependencies
        run: |
          # Install R dependencies

          options(repos=c(CRAN="https://cloud.r-project.org"))

          install.packages(
            c(
              "rmarkdown",
              "knitr"
            )
          )
        shell: Rscript {0}

      - name: Check if renv is initialized
        id: renv-check
        run: |
          # Check if renv is initialized

          if [ -f "renv.lock" ]; then
            echo "exists=true" >> $GITHUB_OUTPUT
          else
            echo "exists=false" >> $GITHUB_OUTPUT
          fi
        shell: bash
        working-directory: './tests/qmd'

      - name: Set up renv
        if: steps.renv-check.outputs.exists == 'true'
        uses: r-lib/actions/setup-renv@v2
        with:
          working-directory: './tests/qmd'

      - name: Install and initialize renv
        if: steps.renv-check.outputs.exists == 'false'
        run: |
          # Install and initialize renv

          options(repos=c(CRAN="https://cloud.r-project.org"))

          install.packages("renv")

          renv::init()
        shell: Rscript {0}
        working-directory: './tests/qmd'

      - name: Render Quarto
        run: |
          # Render Quarto

          quarto render
        shell: bash
        working-directory: './tests/qmd'

      - name: Deploy to GitHub Pages
        uses: JamesIves/github-pages-deploy-action@v4
        with:
          clean: false
          branch: gh-pages
          folder: './tests/qmd/docs'