Fix broken submodules

Author: darthwalsh

dotfiles/claude/settings.json

@@ -80,6 +80,10 @@
       "Write(./MyNotes/**)"
     ]
   },
+  "enabledPlugins": {
+    "walshca@de-ai-native-pm-craft": true,
+    "publish-confluence@de-ai-native-pm-craft": true
+  },
   "extraKnownMarketplaces": {
     "kiln-marketplace": {
       "source": {
@@ -95,8 +99,5 @@
     }
   },
   "effortLevel": "high",
-  "skipDangerousModePermissionPrompt": true,
-  "enabledPlugins": {
-    "walshca@de-ai-native-pm-craft": true
-  }
+  "skipDangerousModePermissionPrompt": true
 }

worktrunk.pre-start

@@ -11,5 +11,6 @@ primary_worktree="${1:?primary worktree path required}"
 git config --file .gitmodules --get-regexp 'submodule\..*\.path' \
     | awk '{print $2}' \
     | while read -r p; do
-        [ -d "$primary_worktree/$p" ] && rsync --archive --quiet "$primary_worktree/$p/" "$p/"
+        # Submodule .git files use worktree-specific gitdir paths; don't copy from primary.
+        [ -d "$primary_worktree/$p" ] && rsync --archive --quiet --exclude '.git' "$primary_worktree/$p/" "$p/"
     done