docling-rag

docling-rag

A pluggable Retrieval-Augmented-Generation subsystem built on the docling.rs document converter.

Pipeline:

source → convert to Markdown → chunk → embed → vector store → retrieve → (answer)

Every external dependency is a trait with swappable backends, so you can mix and match a database, embedder, LLM, document source, and message queue without touching the pipeline.

Quickstart: index a folder and search it

No services needed — the deterministic hash embedder and bundled SQLite let you try the whole pipeline on any folder of documents (Markdown, PDF¹, DOCX, HTML, …) in a minute:

cp .env.example .env         # optional; every key has a default

# 1. point at any documents folder, pick the offline embedder, set an API key
export RAG_SOURCE_PATH=~/Documents/notes
export RAG_EMBED_PROVIDER=hash          # offline; see below for real embeddings
export RAG_API_KEYS=dev-key

# 2. ingest: convert -> chunk -> embed -> store (SQLite at data/rag.db)
cargo run -p docling-rag -- ingest

# 3. search from the CLI — answers with the LLM when OPENROUTER_API_KEY is set,
#    otherwise lists the retrieved chunks (--chunks forces the list)
cargo run -p docling-rag -- query "what did I write about budgets?" --mode hybrid
cargo run -p docling-rag -- stats

# 4. ... or serve the REST API (ingests first thanks to --ingest)
cargo run -p docling-rag -- serve --ingest
curl -H 'X-Api-Key: dev-key' 'http://127.0.0.1:8080/api/search?q=budgets&mode=hybrid&k=5'

For real semantic quality, install Ollama, run ollama pull bge-m3, and drop the RAG_EMBED_PROVIDER=hash override — Ollama + bge-m3 (1024-dim) is the default. Re-ingest after switching embedders (vectors must all come from the same model): rm -rf data/ && cargo run -p docling-rag -- ingest.

¹ PDF/image inputs additionally need the pdfium + ONNX models — see "Getting the ML models" in the root README.

REST API

docling-rag serve exposes the store over HTTP. Authentication uses a static API-key list from config (RAG_API_KEYS, comma-separated); send the key as X-Api-Key: <key>, Authorization: Bearer <key>, or — for links a browser opens directly, where no header can be set — ?api_key=<key>. The server refuses to start with an empty key list; GET / (the built-in UI) and GET /health are the only public routes.

Built-in web UI — GET / serves a single self-contained page (embedded in the binary, no external assets): query box, retrieval-mode and top-k pickers, an LLM-answer toggle, scored results, a live document/chunk counter from /api/stats, and a documents panel — upload a file (converted, chunked and embedded through the full ingest pipeline, with optional enrichment toggles: picture classification, code and formula transcription — each needs its model files, see download_dependencies.sh), open a document's parsed Markdown in a new tab (the md link), or delete one with its chunks. The API key is entered once and kept in the browser's localStorage; every request the page makes carries it as X-Api-Key. The page itself holds no data, which is why it can be public like /health.

Method	Path	Description
GET	/	built-in search UI (no auth; static HTML)
GET	/health	liveness probe (no auth)
GET	/api/stats	document / chunk counts
GET	/api/documents	all documents with metadata + processing metrics
POST	/api/documents	?name=file.pdf (+ optional enrich_pictures/enrich_code/enrich_formulas=true), raw file bytes as the body → full ingest (convert, chunk, embed); dedups identical content
GET	/api/documents/{id}	one document by id
GET	/api/documents/{id}/markdown	the parsed Markdown as stored at ingest, served as text/markdown
DELETE	/api/documents/{id}	remove the document and all its chunks
GET	/api/search	?q=…&mode=…&k=… — mode: vector, bm25, hybrid, multi-query, hyde
POST	/api/search	{"query": "…", "mode": "hybrid", "top_k": 5, "answer": false, "extend": false}

With "answer": true (or ?answer=true) the LLM synthesizes a grounded answer from the retrieved chunks (needs OPENROUTER_API_KEY; multi-query/hyde modes need it too). The LLM client speaks the OpenAI-compatible /chat/completions protocol, so any such endpoint works — e.g. a native DeepSeek key with OPENROUTER_BASE_URL=https://api.deepseek.com and RAG_LLM_MODEL=deepseek-chat (OpenRouter keys start with sk-or-; a sk-… DeepSeek key sent to openrouter.ai gets 401). Responses are JSON: {query, mode, results: [{score, chunk}], answer?}. With "extend": true each result additionally carries a context string — the hit widened with its ordinal neighbors (one chunk before, one after, same document; the UI's "extend context" checkbox). Purely presentational: scoring and the LLM answer still see the original chunks, and adjacent window chunks may repeat their configured overlap.

curl -s -H 'X-Api-Key: dev-key' \
  -H 'Content-Type: application/json' \
  -d '{"query": "how does hybrid search work?", "mode": "multi-query", "answer": true}' \
  http://127.0.0.1:8080/api/search

Features

Concern	Trait	Backends
Chunking	Chunker	window (Markdown sliding window, size 300 + 5% overlap, streaming; default), docling's hierarchical / hybrid (RAG_CHUNKER)
Embeddings	Embedder	Ollama (default, bge-m3, 1024-d), Gemini, local ONNX, hash
Vector store	VectorStore	SQLite + sqlite-vec (default), PostgreSQL + pgvector, in-memory
Retrieval	Retriever	vector, BM25, Hybrid (RRF), Multi-Query fusion, HyDE
LLM	ChatModel	OpenRouter (default model DeepSeek-V3)
Sources	DocumentSource	folder (default), FTP, SFTP
Queues	MessageQueue	in-process (default), RabbitMQ, Redis pub/sub

RAG_CHUNKER selects the chunking strategy. The default window slides a fixed-size window (RAG_CHUNK_SIZE / RAG_CHUNK_OVERLAP) over the converted Markdown and never crosses a heading; it chunks streaming, overlapping page conversion with embedding. hierarchical and hybrid run docling's structure-aware chunkers (docling::chunker) over the document tree instead — one chunk per document item with its heading path, tables triplet-serialized; hybrid additionally splits/merges against a real token budget (RAG_CHUNK_SIZE tokens counted by a HuggingFace tokenizer.json — RAG_CHUNK_TOKENIZER, or models/chunk/tokenizer.json as fetched by scripts/install/download_dependencies.sh). These two need the complete document tree, so conversion is whole-document — but their chunks stream into embedding as the chunkers produce them, overlapping chunking with embedding like the window path. They have no overlap concept (RAG_CHUNK_OVERLAP applies to window only, matching docling's own chunkers), and put the heading path and source item refs in each chunk's metadata.

Documents (metadata) and chunks (text + embedding) are stored in two separate tables.

Advanced retrieval

• Hybrid — fuses dense vector search with sparse BM25 via Reciprocal Rank Fusion.
• Multi-Query (fusion) — the LLM rewrites the question into several diverse queries; each is retrieved and the results are fused with RRF.
• HyDE — the LLM writes a hypothetical answer whose embedding drives the search.

Processing metrics

Every ingested document records per-phase processing metrics in its JSON metadata column (under "metrics"), so new metrics can be added later without a schema migration: source file size, page count (PDF pages, PPTX slides, XLSX sheets), word count, chunk count, and per-phase seconds / words_per_sec for parsing, chunking and embedding — plus pages_per_sec for parsing when the format has pages.

"metrics": {
  "file_bytes": 170934, "pages": 4, "words": 311, "chunks": 2, "embedded_words": 316,
  "parsing":   { "seconds": 0.006, "words_per_sec": 51262.6, "pages_per_sec": 659.3 },
  "chunking":  { "seconds": 0.0,   "words_per_sec": 1119506.4 },
  "embedding": { "seconds": 0.0,   "words_per_sec": 1730381.9 }
}

docling-rag stats prints these as a per-document table.

Configuration

All settings come from the environment (or a .env file). See .env.example at the repo root for the full list with defaults. Nothing is required — an empty environment runs SQLite + Ollama.

CLI

# create the schema
docling-rag init-db

# ingest a folder of documents (any format docling.rs can convert)
RAG_SOURCE_PATH=./docs docling-rag ingest

# retrieve
docling-rag query "how does hybrid search work?" --mode hybrid -k 5

# retrieve + synthesize an answer (needs OPENROUTER_API_KEY)
docling-rag query "how does hybrid search work?" --answer

# sweep chunk sizes / overlaps / modes over a labelled dataset and rank them
docling-rag eval --dataset crates/docling-rag/tests/data/eval_dataset.json

# run an unlabelled QA benchmark through the full RAG+LLM loop (see "eval" below)
docling-rag answers --questions rag/questions.json

# remove incomplete document records left by interrupted ingests
docling-rag prune

# serve the REST API (optionally ingesting first); see "REST API" above
docling-rag serve --ingest --addr 0.0.0.0:8080

Evaluating configurations (eval)

eval sweeps a matrix of chunk sizes / overlaps × retrieval modes over a labelled dataset, builds a fresh in-memory index per chunk config with the configured embedder (RAG_EMBED_PROVIDER — run with Ollama up for real numbers, hash for a quick offline smoke), and prints the configurations ranked best-first:

| chunk | overlap | mode   | embedder | recall | MRR   | nDCG  | ms/query |
|------:|--------:|--------|----------|-------:|------:|------:|---------:|
| 200   | 0.00    | bm25   | hash:512 | 1.000  | 1.000 | 1.000 | 0.30     |
| 300   | 0.05    | hybrid | hash:512 | 1.000  | 0.800 | 0.852 | 0.48     |

• recall@k — fraction of the expected evidence found in the top-k
• MRR — how high the first relevant chunk ranks (1.0 = always first)
• nDCG@k — ranking quality across all relevant hits

Without OPENROUTER_API_KEY the sweep covers the three offline modes (vector/bm25/hybrid); with a key it also evaluates multi-query and hyde.

Two ways to provide the dataset:

# 1. a self-contained file
docling-rag eval --dataset crates/docling-rag/tests/data/eval_dataset.json

# 2. assemble it from the ingested corpus: the .md mirror written by
#    RAG_DOCUMENTS_OUTPUT plus a questions file
docling-rag eval --from-md-dir ./data --questions rag/questions.json \
    --sizes 200,300,500 --overlaps 0,0.05,0.1 --top-k 5   # optional matrix override

Dataset / questions format — a retrieved chunk counts as relevant if it contains any relevant substring (case-insensitive; substrings are used because chunk ids change with every chunking config):

{ "documents": [ { "name": "report", "markdown": "# …" } ],
  "queries":   [ { "query": "default chunk size?", "relevant": ["300 words"] } ] }

The questions file is a plain array and also accepts the QA-benchmark shape {"text": "…", "kind": "boolean|number|name"}; entries without relevant labels are skipped by eval (retrieval scoring needs ground truth) — run those through answers instead:

# Full RAG + LLM loop against the *ingested store* for unlabelled questions:
# prints each answer with its source count and latency (add --json for machines).
docling-rag answers --questions rag/questions.json --mode hybrid -k 5

answers needs OPENROUTER_API_KEY and an ingested store; it does not score correctness (the {text, kind} format carries no gold answers) — it automates running the benchmark so you can review answers and compare latency across modes.

The two commands round-trip: answers --json output is itself a valid questions file (the question field is accepted; answer/ms/… are ignored). The intended workflow is to review those answers, add a "relevant": ["verbatim snippet from the source document", …] array to each entry (the answer text and its [n] citations point at the right passages), and feed the annotated file back to eval to score retrieval configurations.

Maintenance

docling-rag prune removes incomplete document records — rows left behind when an ingest was interrupted (killed mid-run), recognizable by their missing processing metrics. Ingestion is also self-healing: a document's content hash is only written after a fully successful ingest, and re-ingesting a source replaces any stale rows for the same URI.

Library

use docling_rag::{RagConfig, Pipeline, RetrievalMode};

# async fn run() -> docling_rag::Result<()> {
let cfg = RagConfig::from_env()?;
let pipeline = Pipeline::from_config(&cfg).await?;
pipeline.ingest_all().await?;
let hits = pipeline.query(RetrievalMode::Hybrid, "how does chunking work?", 5).await?;
# Ok(()) }

Cargo features

default = ["sqlite", "ollama"]. Optional: postgres, onnx-embed, remote-sources (FTP/SFTP), rabbitmq, redis, gemini, openrouter, and the GPU execution providers cuda / tensorrt / directml / coreml.

GPU

--features cuda puts the whole ingest-and-search path on the GPU where it counts: document conversion (the PDF/image ML pipeline — 1.5–8.7× measured, see docs/PDF_CONFORMANCE.md) and, when onnx-embed is also enabled, the local embedder's ONNX session — both route through the same DOCLING_RS_EP selection as the rest of the stack, so one switch covers everything and a build without a usable GPU falls back to CPU per session:

cargo build --release -p docling-rag --features cuda,onnx-embed
DOCLING_RS_EP=cuda target/release/docling-rag ingest   # pin GPU (or auto/cpu)

HTTP embedders (Ollama/Gemini) are unaffected — their GPU usage is the serving side's business. Runtime requirements match the CLI's CUDA build: CUDA 12 + cuDNN 9, glibc ≥ 2.38 for the static ONNX Runtime link.

The default feature set is fully self-contained and offline-testable (cargo test -p docling-rag) using the bundled SQLite store and the deterministic hashing embedder. The SQLite backend statically compiles the sqlite-vec extension: embeddings live in a vec0 virtual table (cosine metric) and vector_search is a KNN MATCH query, not a full-table scan. The other backends are real client implementations that require the corresponding service (Postgres, an AMQP broker, Redis, an FTP/SSH server, an Ollama/Gemini endpoint, or local ONNX model files) to exercise end-to-end.

OCR language (RAG_OCR_LANG)

Scanned/image-only PDF pages go through OCR. The default recognition model is ch_PP-OCRv3 (multilingual, what docling conformance is measured with) — but its Latin-script word spacing is weak: English-only scans come out with glued words (miscellaneousAImodelsplugins) and I/l confusions. For English documents fetch the English model and switch:

scripts/install/download_dependencies.sh --ocr-en   # ~9 MB
RAG_OCR_LANG=en docling-rag ingest

This maps onto docling-pdf's DOCLING_OCR_REC_ONNX / DOCLING_OCR_DICT (explicit env overrides win), so the same model swap works for any docling.rs binary, not just the RAG pipeline. Note: OCR only runs where a page has no extractable text layer — a born-digital PDF is unaffected by this setting.

Local embedding model (ONNX)

Build with --features onnx-embed and fetch the default model (bge-m3, 1024-d, ~2.3 GB) into the RAG_EMBED_ONNX_PATH / RAG_EMBED_TOKENIZER default paths:

scripts/install/download_dependencies.sh --embed
RAG_EMBED_PROVIDER=onnx docling-rag ingest

The embedder adapts to the graph it loads: it feeds only the inputs the model declares (token_type_ids is optional), and uses either an already-pooled sentence embedding (bge-m3's dense_vecs) or a raw encoder's last_hidden_state mean-pooled over the attention mask — L2-normalized either way. So any sentence-embedding encoder exported to ONNX works; point the two env vars at it. Same ort runtime the PDF pipeline already depends on, and with --features cuda the session runs on the GPU (DOCLING_RS_EP).