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Update cluster.py
- Cosmetic changes
1 parent 0f4a2d2 commit 193f938

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Lines changed: 2 additions & 2 deletions

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captus/cluster.py

Lines changed: 2 additions & 2 deletions
Original file line numberDiff line numberDiff line change
@@ -776,7 +776,7 @@ def dedup_fasta(
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if translate_cds:
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if clust_program == "vsearch":
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log.log("WARNING: vsearch can't cluster aminoacids, MMSeqs will be used instead")
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log.log("WARNING: VSEARCH can't cluster aminoacids, MMSeqs will be used instead")
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dedup_cmd = [
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mmseqs_path,
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"easy-cluster",
@@ -956,7 +956,7 @@ def cluster_markers(
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if overwrite is True or not cluster_tsv_path.exists() or file_is_empty(cluster_tsv_path):
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if translate_cds:
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if clust_program == "vsearch":
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log.log("WARNING: vsearch can't cluster aminoacids, MMSeqs will be used instead")
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log.log("WARNING: VSEARCH can't cluster aminoacids, MMSeqs will be used instead")
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mmseqs_tmp_dir = Path(fasta_concat_path.parent, "mmseqs_tmp")
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message = mmseqs_cluster(
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mmseqs_path,

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