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Expand file tree Collapse file tree Original file line number Diff line number Diff line change @@ -776,7 +776,7 @@ def dedup_fasta(
776776
777777 if translate_cds :
778778 if clust_program == "vsearch" :
779- log .log ("WARNING: vsearch can't cluster aminoacids, MMSeqs will be used instead" )
779+ log .log ("WARNING: VSEARCH can't cluster aminoacids, MMSeqs will be used instead" )
780780 dedup_cmd = [
781781 mmseqs_path ,
782782 "easy-cluster" ,
@@ -956,7 +956,7 @@ def cluster_markers(
956956 if overwrite is True or not cluster_tsv_path .exists () or file_is_empty (cluster_tsv_path ):
957957 if translate_cds :
958958 if clust_program == "vsearch" :
959- log .log ("WARNING: vsearch can't cluster aminoacids, MMSeqs will be used instead" )
959+ log .log ("WARNING: VSEARCH can't cluster aminoacids, MMSeqs will be used instead" )
960960 mmseqs_tmp_dir = Path (fasta_concat_path .parent , "mmseqs_tmp" )
961961 message = mmseqs_cluster (
962962 mmseqs_path ,
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