MIXTURE v0.0.1: errors with GetMetrics and ProportionPlot

[AGordonRobertson]

I've just run v0.0.1 in R v4.0.3 on macOS 10.15.7, using RStudio v1.3.1073.

First I ran the LM22 example. This wrote out an XLSX, but gave errors with GetMetrics and ProportionPlot:
GetMetrics(mix.test)
Error in switch(metric, all = return(obj$Subject$ACCmetric), RMSE = return(GetRMSE(obj,
:EXPR must be a length 1 vector

ProportionPlot(mix.test)
Error: Insufficient values in manual scale. 22 needed but only 0 provided.
Run rlang::last_error() to see where the error occurred.

Then I ran this version with a data frame of FPKMs for 19.5k human coding genes and ~110 samples.
system.time(
mix.test <- MIXTURE(
expressionMatrix = xxx.fpkms,
#expressionMatrix = LM22,
signatureMatrix = LM22,
iter = 1000,
functionMixture = nu.svm.robust.RFE,
useCores = 6,
verbose = TRUE,
nullDist = "PopulationBased",
fileSave = "xxx_MIXTURE_FILE_LM22.xlsx"
)
)

On 6 2.6 GHz i7 cores, this finished in ~210 secs. It wrote out an XLSX.

But I again get errors with GetMetrics and ProportionPlot. From what I can see, the error messages are the same as for the LM22 self-test.

I can run GetMixture(mix.test) and GetPvalues(mix.test) without errors.

[elmerfer]

Dear Gordon, pls check it now.
and let me know

[AGordonRobertson]

Have installed from Github, am trying the new version now, thanks. G On Jan 4, 2021, at 12:45, elmerfer <notifications@github.com<mailto:notifications@github.com>> wrote: Dear Gordon, pls check it now. and let me know — You are receiving this because you authored the thread. Reply to this email directly, view it on GitHub<#1 (comment)>, or unsubscribe<https://github.com/notifications/unsubscribe-auth/ABT6GSRSU6DEK6FQQVO7WFTSYISFPANCNFSM4VF7K7SA>.