Merge branch 'schema-urgent-fixes' into schema-urgent-fixes-endpoints-all-absolute-paths

mbaudis · web-flow · commit 1d60a27ce410 · 2025-06-26T15:58:03.000+02:00
diff --git a/models/json/beacon-v2-default-model/analyses/endpoints.json b/models/json/beacon-v2-default-model/analyses/endpoints.json
@@ -30,7 +30,7 @@
                 "in": "query",
                 "name": "includeResultsetResponses",
                 "schema": {
-                    "$ref": "https://raw.githubusercontent.com/ga4gh-beacon/beacon-v2/main/framework/json/common/beaconCommonComponents.json#/definitions/IncludeResultsetResponses"
+                    "$ref": "https://raw.githubusercontent.com/ga4gh-beacon/beacon-v2/main/framework/json/common/beaconCommonComponents.json#/$defs/IncludeResultsetResponses"
                 }
             },
             "limit": {
diff --git a/models/json/beacon-v2-default-model/biosamples/endpoints.json b/models/json/beacon-v2-default-model/biosamples/endpoints.json
@@ -40,7 +40,7 @@
                 "in": "query",
                 "name": "includeResultsetResponses",
                 "schema": {
-                    "$ref": "https://raw.githubusercontent.com/ga4gh-beacon/beacon-v2/main/framework/json/common/beaconCommonComponents.json#/definitions/IncludeResultsetResponses"
+                    "$ref": "https://raw.githubusercontent.com/ga4gh-beacon/beacon-v2/main/framework/json/common/beaconCommonComponents.json#/$defs/IncludeResultsetResponses"
                 }
             },
             "limit": {
diff --git a/models/json/beacon-v2-default-model/genomicVariations/endpoints.json b/models/json/beacon-v2-default-model/genomicVariations/endpoints.json
@@ -92,7 +92,7 @@
                 "in": "query",
                 "name": "includeResultsetResponses",
                 "schema": {
-                    "$ref": "https://raw.githubusercontent.com/ga4gh-beacon/beacon-v2/main/framework/json/common/beaconCommonComponents.json#/definitions/IncludeResultsetResponses"
+                    "$ref": "https://raw.githubusercontent.com/ga4gh-beacon/beacon-v2/main/framework/json/common/beaconCommonComponents.json#/$defs/IncludeResultsetResponses"
                 }
             },
             "limit": {
diff --git a/models/json/beacon-v2-default-model/individuals/endpoints.json b/models/json/beacon-v2-default-model/individuals/endpoints.json
@@ -30,7 +30,7 @@
                 "in": "query",
                 "name": "includeResultsetResponses",
                 "schema": {
-                    "$ref": "https://raw.githubusercontent.com/ga4gh-beacon/beacon-v2/main/framework/json/common/beaconCommonComponents.json#/definitions/IncludeResultsetResponses"
+                    "$ref": "https://raw.githubusercontent.com/ga4gh-beacon/beacon-v2/main/framework/json/common/beaconCommonComponents.json#/$defs/IncludeResultsetResponses"
                 }
             },
             "limit": {
diff --git a/models/json/beacon-v2-default-model/runs/endpoints.json b/models/json/beacon-v2-default-model/runs/endpoints.json
@@ -38,7 +38,7 @@
                 "in": "query",
                 "name": "includeResultsetResponses",
                 "schema": {
-                    "$ref": "https://raw.githubusercontent.com/ga4gh-beacon/beacon-v2/main/framework/json/common/beaconCommonComponents.json#/definitions/IncludeResultsetResponses"
+                    "$ref": "https://raw.githubusercontent.com/ga4gh-beacon/beacon-v2/main/framework/json/common/beaconCommonComponents.json#/$defs/IncludeResultsetResponses"
                 }
             },
             "individualId": {
diff --git a/models/src/beacon-v2-default-model/analyses/endpoints.yaml b/models/src/beacon-v2-default-model/analyses/endpoints.yaml
@@ -172,7 +172,7 @@ components:
       name: includeResultsetResponses
       in: query
       schema:
-        $ref: https://raw.githubusercontent.com/ga4gh-beacon/beacon-v2/main/framework/json/common/beaconCommonComponents.json#/definitions/IncludeResultsetResponses
+        $ref: https://raw.githubusercontent.com/ga4gh-beacon/beacon-v2/main/framework/json/common/beaconCommonComponents.json#/$defs/IncludeResultsetResponses
     entryId:
       name: id
       in: path
diff --git a/models/src/beacon-v2-default-model/biosamples/endpoints.yaml b/models/src/beacon-v2-default-model/biosamples/endpoints.yaml
@@ -262,7 +262,7 @@ components:
       name: includeResultsetResponses
       in: query
       schema:
-        $ref: https://raw.githubusercontent.com/ga4gh-beacon/beacon-v2/main/framework/json/common/beaconCommonComponents.json#/definitions/IncludeResultsetResponses
+        $ref: https://raw.githubusercontent.com/ga4gh-beacon/beacon-v2/main/framework/json/common/beaconCommonComponents.json#/$defs/IncludeResultsetResponses
     entryId:
       name: id
       in: path
diff --git a/models/src/beacon-v2-default-model/genomicVariations/endpoints.yaml b/models/src/beacon-v2-default-model/genomicVariations/endpoints.yaml
@@ -222,7 +222,7 @@ components:
       name: includeResultsetResponses
       in: query
       schema:
-        $ref: https://raw.githubusercontent.com/ga4gh-beacon/beacon-v2/main/framework/json/common/beaconCommonComponents.json#/definitions/IncludeResultsetResponses
+        $ref: https://raw.githubusercontent.com/ga4gh-beacon/beacon-v2/main/framework/json/common/beaconCommonComponents.json#/$defs/IncludeResultsetResponses
     entryId:
       name: id
       in: path
diff --git a/models/src/beacon-v2-default-model/individuals/endpoints.yaml b/models/src/beacon-v2-default-model/individuals/endpoints.yaml
@@ -257,7 +257,7 @@ components:
       name: includeResultsetResponses
       in: query
       schema:
-        $ref: https://raw.githubusercontent.com/ga4gh-beacon/beacon-v2/main/framework/json/common/beaconCommonComponents.json#/definitions/IncludeResultsetResponses
+        $ref: https://raw.githubusercontent.com/ga4gh-beacon/beacon-v2/main/framework/json/common/beaconCommonComponents.json#/$defs/IncludeResultsetResponses
     entryId:
       name: id
       in: path
diff --git a/models/src/beacon-v2-default-model/runs/endpoints.yaml b/models/src/beacon-v2-default-model/runs/endpoints.yaml
@@ -211,7 +211,7 @@ components:
       name: includeResultsetResponses
       in: query
       schema:
-        $ref: https://raw.githubusercontent.com/ga4gh-beacon/beacon-v2/main/framework/json/common/beaconCommonComponents.json#/definitions/IncludeResultsetResponses
+        $ref: https://raw.githubusercontent.com/ga4gh-beacon/beacon-v2/main/framework/json/common/beaconCommonComponents.json#/$defs/IncludeResultsetResponses
     entryId:
       name: id
       in: path

Original file line number	Diff line number	Diff line change
`@@ -30,7 +30,7 @@`
`30`	`30`	`"in": "query",`
`31`	`31`	`"name": "includeResultsetResponses",`
`32`	`32`	`"schema": {`
`33`		`- "$ref": "https://raw.githubusercontent.com/ga4gh-beacon/beacon-v2/main/framework/json/common/beaconCommonComponents.json#/definitions/IncludeResultsetResponses"`
	`33`	`+ "$ref": "https://raw.githubusercontent.com/ga4gh-beacon/beacon-v2/main/framework/json/common/beaconCommonComponents.json#/$defs/IncludeResultsetResponses"`
`34`	`34`	`}`
`35`	`35`	`},`
`36`	`36`	`"limit": {`
Original file line number	Diff line number	Diff line change
`@@ -40,7 +40,7 @@`
`40`	`40`	`"in": "query",`
`41`	`41`	`"name": "includeResultsetResponses",`
`42`	`42`	`"schema": {`
`43`		`- "$ref": "https://raw.githubusercontent.com/ga4gh-beacon/beacon-v2/main/framework/json/common/beaconCommonComponents.json#/definitions/IncludeResultsetResponses"`
	`43`	`+ "$ref": "https://raw.githubusercontent.com/ga4gh-beacon/beacon-v2/main/framework/json/common/beaconCommonComponents.json#/$defs/IncludeResultsetResponses"`
`44`	`44`	`}`
`45`	`45`	`},`
`46`	`46`	`"limit": {`
Original file line number	Diff line number	Diff line change
`@@ -92,7 +92,7 @@`
`92`	`92`	`"in": "query",`
`93`	`93`	`"name": "includeResultsetResponses",`
`94`	`94`	`"schema": {`
`95`		`- "$ref": "https://raw.githubusercontent.com/ga4gh-beacon/beacon-v2/main/framework/json/common/beaconCommonComponents.json#/definitions/IncludeResultsetResponses"`
	`95`	`+ "$ref": "https://raw.githubusercontent.com/ga4gh-beacon/beacon-v2/main/framework/json/common/beaconCommonComponents.json#/$defs/IncludeResultsetResponses"`
`96`	`96`	`}`
`97`	`97`	`},`
`98`	`98`	`"limit": {`
Original file line number	Diff line number	Diff line change
`@@ -38,7 +38,7 @@`
`38`	`38`	`"in": "query",`
`39`	`39`	`"name": "includeResultsetResponses",`
`40`	`40`	`"schema": {`
`41`		`- "$ref": "https://raw.githubusercontent.com/ga4gh-beacon/beacon-v2/main/framework/json/common/beaconCommonComponents.json#/definitions/IncludeResultsetResponses"`
	`41`	`+ "$ref": "https://raw.githubusercontent.com/ga4gh-beacon/beacon-v2/main/framework/json/common/beaconCommonComponents.json#/$defs/IncludeResultsetResponses"`
`42`	`42`	`}`
`43`	`43`	`},`
`44`	`44`	`"individualId": {`