You signed in with another tab or window. Reload to refresh your session.You signed out in another tab or window. Reload to refresh your session.You switched accounts on another tab or window. Reload to refresh your session.Dismiss alert
Copy file name to clipboardExpand all lines: README.md
+4-2Lines changed: 4 additions & 2 deletions
Display the source diff
Display the rich diff
Original file line number
Diff line number
Diff line change
@@ -1,6 +1,6 @@
1
1
# AbExp variant effect prediction pipeline
2
2
3
-
AbExp is a tool to predict aberrant gene underexpression in 48 human tissue based on DNA sequence variants.
3
+
AbExp is a tool to predict aberrant gene expression in 49 human tissue based on DNA sequence variants.
4
4
It was trained on aberrant gene expression calls from the GTEx dataset.
5
5
6
6
This repository contains a bioinformatics software pipeline for calculating **AbExp variant effect predictions**, taking vcf files as input.
@@ -18,7 +18,9 @@ The preprint to this method can be found in [bioRxiv](https://doi.org/10.1101/20
18
18
19
19
## Setup
20
20
21
-
1) install conda and mamba on your system
21
+
1) install conda and mamba on your system.
22
+
23
+
Tip: Use the [conda-libmamba-solver](https://conda.github.io/conda-libmamba-solver/user-guide/) for an improved experience when installing environments with `conda`!
22
24
2) To download the VEP cache (if not existing yet):
0 commit comments