Merge pull request #104 from gagneurlab/hdf5_name

vyepez88 · web-flow · commit 25cd74dfe365 · 2025-06-04T18:25:53.000+02:00
Hdf5 cache
diff --git a/DESCRIPTION b/DESCRIPTION
@@ -1,8 +1,8 @@
 Package: FRASER
 Type: Package
 Title: Find RAre Splicing Events in RNA-Seq Data
-Version: 2.4.2
-Date: 2025-05-11
+Version: 2.4.3
+Date: 2025-06-04
 Authors@R: c(
     person("Christian", "Mertes", role=c("aut", "cre"), 
             email="mertes@in.tum.de", comment=c(ORCID="0000-0002-1091-205X")),
diff --git a/R/calculatePSIValue.R b/R/calculatePSIValue.R
@@ -126,6 +126,7 @@ calculatePSIValuePrimeSite <- function(fds, psiType, overwriteCts, BPPARAM){
             }
             
             # write other counts and psi values to h5 file
+	    if (file.exists(cacheFile)) file.remove(cacheFile)
             # get defined chunk sizes
             chunkDims <- c(
                 min(nrow(countData), options()[['FRASER-hdf5-chunk-nrow']]),

Original file line number	Diff line number	Diff line change
`@@ -126,6 +126,7 @@ calculatePSIValuePrimeSite <- function(fds, psiType, overwriteCts, BPPARAM){`
`126`	`126`	`}`
`127`	`127`
`128`	`128`	`# write other counts and psi values to h5 file`
	`129`	`+ if (file.exists(cacheFile)) file.remove(cacheFile)`
`129`	`130`	`# get defined chunk sizes`
`130`	`131`	`chunkDims <- c(`
`131`	`132`	`min(nrow(countData), options()[['FRASER-hdf5-chunk-nrow']]),`