Documentation for using NEON container

[rbartelme]

Docker and R package documentation for the NEON microbiome group

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Rough Draft of Pages

Logging on to CyVerse VICE:

• logon to de2
• location of the community data
• executing the app
• importing github repositories

Getting the data via:

• NEON API
• webhooks (wget/curl)
• iRODS and data store
• iRODS configuration

NEON workflow explanation

• Need input from group on this

Output from analyses

• tax tables
• relative abundance counts