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Expand file tree Collapse file tree Original file line number Diff line number Diff line change 1- from builtins import str
2- from builtins import object
31import os
42import logging
53import time
2523import getpass
2624
2725
28- class Bank ( object ) :
26+ class Bank :
2927 """
3028 BioMAJ bank
3129 """
Original file line number Diff line number Diff line change 1- from builtins import object
21from pymongo import MongoClient
32
43
5- class MongoConnector ( object ) :
4+ class MongoConnector :
65 """
76 Connector to mongodb
87 """
Original file line number Diff line number Diff line change 1- from builtins import str
2- from builtins import object
31import smtplib
42import email .utils
53from biomaj .workflow import Workflow
86import sys
97from email .mime .base import MIMEBase
108from email .mime .multipart import MIMEMultipart
9+ from email .mime .text import MIMEText
1110from email import encoders
12- from jinja2 import Template
1311
14- if sys .version < '3' :
15- from email .MIMEText import MIMEText
16- else :
17- from email .mime .text import MIMEText
12+ from jinja2 import Template
1813
1914
20- class Notify ( object ) :
15+ class Notify :
2116 """
2217 Send notifications
2318 """
Original file line number Diff line number Diff line change 1- from builtins import object
2-
3-
4- class Options (object ):
1+ class Options :
52 """
63 Available options
74 """
Original file line number Diff line number Diff line change 1- from builtins import str
21import threading
32import logging
43import os
Original file line number Diff line number Diff line change 1- from builtins import range
2- from builtins import object
31import threading
42import logging
53import os
64from biomaj .process .metaprocess import MetaProcess
75
86
9- class ProcessFactory ( object ) :
7+ class ProcessFactory :
108 '''
119 Manage process execution
1210 '''
Original file line number Diff line number Diff line change 1- from __future__ import print_function
21import pkg_resources
32import string
43import random
1211import logging
1312
1413
15- class SchemaVersion ( object ) :
14+ class SchemaVersion :
1615
1716 """
1817 BioMAJ database schema version. This package can be used to make some schema modification if needed during
Original file line number Diff line number Diff line change 1- from future import standard_library
2- from builtins import str
3- from builtins import object
41import os
52import time
63import copy
74import sys
85
96from biomaj .workflow import Workflow
107
11- standard_library .install_aliases ()
128
139
14- class Session ( object ) :
10+ class Session :
1511 """
1612 BioMAJ bank session
1713 """
Original file line number Diff line number Diff line change 1- from builtins import str
2- from builtins import range
3- from builtins import object
41import logging
52import datetime
63import time
2926from packaging .version import parse
3027
3128
32- class Workflow ( object ) :
29+ class Workflow :
3330 """
3431 Bank update workflow
3532 """
Original file line number Diff line number Diff line change 55ldap3
66py-bcrypt
77drmaa
8- future
98elasticsearch
109biomaj_core
1110biomaj_user
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