⬆️ UPGRADE: Autoupdate pre-commit config (#373)

* ⬆️ UPGRADE: Autoupdate pre-commit config

* 🧹 Fix issues due to tool updates

* 🩹 Pin 'matplotlib-inline' version to be compatible with pinned matplotlib min version

---------

Co-authored-by: s-weigand <41898282+github-actions[bot]@users.noreply.github.com>
Co-authored-by: Sebastian Weigand <s.weigand.phy@gmail.com>

Author: github-actions[bot]

.gitattributes

@@ -1,2 +1 @@
 *	text=lf
-*.bat	text eol=crlf

.github/requirements_min.txt

@@ -3,6 +3,7 @@
 cycler==0.10.0
 docstring-parser==0.16
 matplotlib==3.3.0
+matplotlib-inline==0.1.0
 numpy==1.22.0
 packaging==23.1
 pydantic==2.7.0

.pre-commit-config.yaml

@@ -4,26 +4,26 @@ ci:
 repos:
   # Formatters
   - repo: https://github.com/pre-commit/pre-commit-hooks
-    rev: v5.0.0
+    rev: v6.0.0
     hooks:
       - id: check-ast
       - id: check-builtin-literals
       - id: check-merge-conflict
       - id: end-of-file-fixer
       - id: trailing-whitespace
       - id: debug-statements
-      - id: fix-encoding-pragma
-        args: [--remove]
+      - id: mixed-line-ending
+        args: [--fix=lf]
 
   - repo: https://github.com/PyCQA/docformatter
-    rev: 06907d0
+    rev: v1.7.7
     hooks:
       - id: docformatter
         additional_dependencies: [tomli]
         args: [--in-place, --config, ./pyproject.toml]
 
   - repo: https://github.com/tox-dev/pyproject-fmt
-    rev: "v2.5.1"
+    rev: "v2.11.1"
     hooks:
       - id: pyproject-fmt
 
@@ -32,22 +32,21 @@ repos:
     hooks:
       - id: absolufy-imports
 
-  - repo: https://github.com/pre-commit/mirrors-prettier
-    rev: v4.0.0-alpha.8 # Use the sha or tag you want to point at
+  - repo: https://github.com/pycontribs/mirrors-prettier
+    rev: "v3.6.2"
     hooks:
       - id: prettier
-        additional_dependencies: ["prettier@3.3.3"]
 
   # Notebook tools
   - repo: https://github.com/kynan/nbstripout
-    rev: 0.8.1
+    rev: 0.8.2
     hooks:
       - id: nbstripout
         args: [--drop-empty-cells]
 
   - repo: https://github.com/astral-sh/ruff-pre-commit
     # Ruff version.
-    rev: v0.9.10
+    rev: v0.14.10
     hooks:
       - id: ruff
         name: "ruff sort imports notebooks"
@@ -73,7 +72,7 @@ repos:
   # Linters
 
   - repo: https://github.com/pre-commit/mirrors-mypy
-    rev: v1.15.0
+    rev: v1.19.1
     hooks:
       - id: mypy
         exclude: ^docs
@@ -89,7 +88,7 @@ repos:
 
   - repo: https://github.com/astral-sh/ruff-pre-commit
     # Ruff version.
-    rev: v0.9.10
+    rev: v0.14.10
     hooks:
       - id: ruff
         name: "ruff sort imports"
@@ -104,7 +103,7 @@ repos:
         name: "ruff lint"
 
   - repo: https://github.com/PyCQA/flake8
-    rev: 7.1.2
+    rev: 7.3.0
     hooks:
       - id: flake8
         alias: flake8-docs
@@ -128,7 +127,7 @@ repos:
         args: ["--ignore-words-list=doas"]
 
   - repo: https://github.com/rhysd/actionlint
-    rev: "v1.7.7"
+    rev: "v1.7.10"
     hooks:
       - id: actionlint
 

pyglotaran_extras/config/plot_config.py

@@ -205,7 +205,7 @@ def serialize(self) -> dict[str, Any]:
             serialized["default_args_override"] = self.default_args_override
         if len(self.axis_label_override) > 0:
             serialized["axis_label_override"] = cast(
-                PlotLabelOverrideMap, self.axis_label_override
+                "PlotLabelOverrideMap", self.axis_label_override
             ).model_dump()
         return serialized
 
@@ -270,7 +270,7 @@ def update_axes_labels(self, axes: Axes | Iterable[Axes]) -> None:
             if isinstance(ax, Axes):
                 orig_x_label = ax.get_xlabel()
                 orig_y_label = ax.get_ylabel()
-                axis_label_override = cast(PlotLabelOverrideMap, self.axis_label_override)
+                axis_label_override = cast("PlotLabelOverrideMap", self.axis_label_override)
 
                 if (
                     override_label := axis_label_override.find_axis_label(orig_x_label, "x")
@@ -362,19 +362,21 @@ def merge(self, other: PlotConfig) -> PlotConfig:  # noqa: C901
         updated: dict[str, PerFunctionPlotConfig] = {}
         # Update general field
         for key in self.model_fields_set:
-            updated[key] = cast(PerFunctionPlotConfig, getattr(self, key))
+            updated[key] = cast("PerFunctionPlotConfig", getattr(self, key))
             if key in other.model_fields_set:
-                updated[key] = updated[key].merge(cast(PerFunctionPlotConfig, getattr(other, key)))
+                updated[key] = updated[key].merge(
+                    cast("PerFunctionPlotConfig", getattr(other, key))
+                )
         for key in other.model_fields_set:
             if key not in updated:
                 updated[key] = getattr(other, key)
         # Update model_extra
         if self.model_extra is not None:
             for key, value in self.model_extra.items():
-                updated[key] = cast(PerFunctionPlotConfig, value)
+                updated[key] = cast("PerFunctionPlotConfig", value)
                 if other.model_extra is not None and key in other.model_extra:
                     updated[key] = updated[key].merge(
-                        cast(PerFunctionPlotConfig, other.model_extra[key])
+                        cast("PerFunctionPlotConfig", other.model_extra[key])
                     )
         if other.model_extra is not None:
             for key, value in other.model_extra.items():
@@ -525,8 +527,8 @@ def wrapper(*args: Param.args, **kwargs: Param.kwargs) -> RetType:  # noqa: DOC
             function_config = CONFIG.plotting.get_function_config(func.__name__)
             override_kwargs = function_config.find_override_kwargs(not_user_provided_kwargs)
             updated_kwargs = kwargs | override_kwargs
-            arg_axes = find_axes(getcallargs(func, *args, **updated_kwargs).values())
-            return_values = func(*args, **updated_kwargs)
+            arg_axes = find_axes(getcallargs(func, *args, **updated_kwargs).values())  # type: ignore[arg-type]
+            return_values = func(*args, **updated_kwargs)  # type: ignore[arg-type]
             function_config.update_axes_labels(arg_axes)
 
             if isinstance(return_values, Iterable):

pyglotaran_extras/plotting/plot_irf_dispersion_center.py

@@ -6,7 +6,6 @@
 from typing import cast
 
 import matplotlib.pyplot as plt
-import xarray as xr
 
 from pyglotaran_extras.config.plot_config import use_plot_config
 from pyglotaran_extras.io.utils import result_dataset_mapping
@@ -17,6 +16,7 @@
 if TYPE_CHECKING:
     from typing import Literal
 
+    import xarray as xr
     from cycler import Cycler
     from matplotlib.axes import Axes
     from matplotlib.figure import Figure
@@ -104,7 +104,7 @@ def _plot_irf_dispersion_center(
         If it is None the time axis will not be shifted. Defaults to None.
     """
     add_cycler_if_not_none(ax, cycler)
-    irf = cast(xr.DataArray, extract_irf_dispersion_center(res, as_dataarray=True))
+    irf = cast("xr.DataArray", extract_irf_dispersion_center(res, as_dataarray=True))
     if irf_location is not None:
         (irf - irf_location).plot(ax=ax, label=label, **{spectral_axis: "spectral"})
     else:

pyproject.toml

@@ -25,6 +25,7 @@ classifiers = [
   "Programming Language :: Python :: 3.11",
   "Programming Language :: Python :: 3.12",
   "Programming Language :: Python :: 3.13",
+  "Programming Language :: Python :: 3.14",
   "Topic :: Scientific/Engineering",
   "Topic :: Scientific/Engineering :: Chemistry",
   "Topic :: Scientific/Engineering :: Physics",

tests/deprecation/test_deprecation_utils.py

@@ -117,9 +117,9 @@ def test_warn_deprecated():
             to_be_removed_in_version="0.6.0",
         )
 
-        assert len(record) == 1
-        assert record[0].message.args[0] == DEPRECATION_WARN_MESSAGE
-        assert Path(record[0].filename) == Path(__file__)
+    assert len(record) == 1
+    assert record[0].message.args[0] == DEPRECATION_WARN_MESSAGE
+    assert Path(record[0].filename) == Path(__file__)
 
 
 @pytest.mark.usefixtures("_pyglotaran_extras_1_0_0")