Configure Renovate (#208)

* Add renovate.json

* Switch to prek and use uv lock files.

* Trigger CI.

---------

Co-authored-by: renovate[bot] <29139614+renovate[bot]@users.noreply.github.com>
Co-authored-by: Joshua A. Anderson <joaander@umich.edu>

Author: renovate[bot]

.github/CODEOWNERS

@@ -0,0 +1,35 @@
+name: Style
+
+concurrency:
+  group: ${{ github.workflow }}-${{ github.head_ref || github.run_id }}
+  cancel-in-progress: true
+
+on:
+  pull_request:
+
+  workflow_dispatch:
+
+  push:
+    branches:
+    - main
+
+jobs:
+  prek:
+    runs-on: ubuntu-24.04
+    steps:
+    - name: Checkout
+      uses: actions/checkout@08c6903cd8c0fde910a37f88322edcfb5dd907a8 # v5.0.0
+    - name: prek
+      uses: glotzerlab/workflows/prek@1fe577d5430222a9793694a14cdb316cf8f720e1 # 0.9.0
+
+  # This job is used to provide a single requirement for branch merge conditions.
+  tests_complete:
+    name: All style checks
+    if: always()
+    needs: [prek]
+    runs-on: ubuntu-24.04
+
+    steps:
+    - run: jq --exit-status 'all(.result == "success")' <<< '${{ toJson(needs) }}'
+    - name: Done
+      run: exit 0

.github/dependabot.yml

@@ -1,8 +1,3 @@
-ci:
-  autoupdate_schedule: quarterly
-  # We skip bibtex-tidy in pre-commit.ci due to https://github.com/FlamingTempura/bibtex-tidy/issues/427
-  skip: [bibtex-tidy]
-
 repos:
   - repo: https://github.com/pre-commit/pre-commit-hooks
     rev: 'v5.0.0'
@@ -43,24 +38,24 @@ repos:
     rev: 1.19.1
     hooks:
       - id: blacken-docs
-  - repo: https://github.com/FlamingTempura/bibtex-tidy
-    rev: 'v1.14.0'
-    hooks:
-      - id: bibtex-tidy
-        args:
-          - --omit=abstract,keywords,archiveprefix,mendeley-tags,pmid,eprint,arxivid
-          - --wrap=90
-          - --curly
-          - --numeric
-          - --space=2
-          - --align=0
-          - --sort=key,type,author,-year
-          - --duplicates=key,doi,citation
-          - --strip-enclosing-braces
-          - --drop-all-caps
-          - --sort-fields=title,shorttitle,author,year,month,day,journal,booktitle,location,on,publisher,address,series,volume,number,pages,doi,isbn,issn,url,urldate,copyright,category,note,metadata
-          - --remove-empty-fields
-          - --no-remove-dupe-fields
+  # - repo: https://github.com/FlamingTempura/bibtex-tidy
+  #   rev: 'v1.14.0'
+  #   hooks:
+  #     - id: bibtex-tidy
+  #       args:
+  #         - --omit=abstract,keywords,archiveprefix,mendeley-tags,pmid,eprint,arxivid
+  #         - --wrap=90
+  #         - --curly
+  #         - --numeric
+  #         - --space=2
+  #         - --align=0
+  #         - --sort=key,type,author,-year
+  #         - --duplicates=key,doi,citation
+  #         - --strip-enclosing-braces
+  #         - --drop-all-caps
+  #         - --sort-fields=title,shorttitle,author,year,month,day,journal,booktitle,location,on,publisher,address,series,volume,number,pages,doi,isbn,issn,url,urldate,copyright,category,note,metadata
+  #         - --remove-empty-fields
+  #         - --no-remove-dupe-fields
   - repo: https://github.com/pre-commit/pygrep-hooks
     rev: 'v1.10.0'
     hooks:

.github/workflows/style.yaml

@@ -0,0 +1,9 @@
+IPython
+jupyter_client
+jupyter_sphinx
+nbconvert
+nbsphinx
+sphinx-hoverxref
+sphinx>=4.0.0
+sphinx_rtd_theme>=1.0.0
+sphinxcontrib-bibtex>=2.2.0

.pre-commit-config.yaml

@@ -1,9 +1,237 @@
-IPython
-jupyter_client
-jupyter_sphinx
-nbconvert
-nbsphinx
-sphinx-hoverxref
-sphinx>=4.0.0
-sphinx_rtd_theme>=1.0.0
-sphinxcontrib-bibtex>=2.2.0
+# This file was autogenerated by uv via the following command:
+#    uv pip compile docs/requirements.in --output-file=docs/requirements.txt
+alabaster==1.0.0
+    # via sphinx
+appnope==0.1.4
+    # via ipykernel
+asttokens==3.0.0
+    # via stack-data
+attrs==25.3.0
+    # via
+    #   jsonschema
+    #   referencing
+babel==2.17.0
+    # via sphinx
+beautifulsoup4==4.13.5
+    # via nbconvert
+bleach==6.2.0
+    # via nbconvert
+certifi==2025.8.3
+    # via requests
+charset-normalizer==3.4.3
+    # via requests
+comm==0.2.3
+    # via
+    #   ipykernel
+    #   ipywidgets
+debugpy==1.8.16
+    # via ipykernel
+decorator==5.2.1
+    # via ipython
+defusedxml==0.7.1
+    # via nbconvert
+docutils==0.21.2
+    # via
+    #   nbsphinx
+    #   pybtex-docutils
+    #   sphinx
+    #   sphinx-rtd-theme
+    #   sphinxcontrib-bibtex
+executing==2.2.1
+    # via stack-data
+fastjsonschema==2.21.2
+    # via nbformat
+idna==3.10
+    # via requests
+imagesize==1.4.1
+    # via sphinx
+ipykernel==6.30.1
+    # via jupyter-sphinx
+ipython==9.5.0
+    # via
+    #   -r docs/requirements.in
+    #   ipykernel
+    #   ipywidgets
+    #   jupyter-sphinx
+ipython-pygments-lexers==1.1.1
+    # via ipython
+ipywidgets==8.1.7
+    # via jupyter-sphinx
+jedi==0.19.2
+    # via ipython
+jinja2==3.1.6
+    # via
+    #   nbconvert
+    #   nbsphinx
+    #   sphinx
+jsonschema==4.25.1
+    # via nbformat
+jsonschema-specifications==2025.9.1
+    # via jsonschema
+jupyter-client==8.6.3
+    # via
+    #   -r docs/requirements.in
+    #   ipykernel
+    #   nbclient
+jupyter-core==5.8.1
+    # via
+    #   ipykernel
+    #   jupyter-client
+    #   nbclient
+    #   nbconvert
+    #   nbformat
+jupyter-sphinx==0.5.3
+    # via -r docs/requirements.in
+jupyterlab-pygments==0.3.0
+    # via nbconvert
+jupyterlab-widgets==3.0.15
+    # via ipywidgets
+latexcodec==3.0.1
+    # via pybtex
+markupsafe==3.0.2
+    # via
+    #   jinja2
+    #   nbconvert
+matplotlib-inline==0.1.7
+    # via
+    #   ipykernel
+    #   ipython
+mistune==3.1.4
+    # via nbconvert
+nbclient==0.10.2
+    # via nbconvert
+nbconvert==7.16.6
+    # via
+    #   -r docs/requirements.in
+    #   jupyter-sphinx
+    #   nbsphinx
+nbformat==5.10.4
+    # via
+    #   jupyter-sphinx
+    #   nbclient
+    #   nbconvert
+    #   nbsphinx
+nbsphinx==0.9.7
+    # via -r docs/requirements.in
+nest-asyncio==1.6.0
+    # via ipykernel
+packaging==25.0
+    # via
+    #   ipykernel
+    #   nbconvert
+    #   sphinx
+pandocfilters==1.5.1
+    # via nbconvert
+parso==0.8.5
+    # via jedi
+pexpect==4.9.0
+    # via ipython
+platformdirs==4.4.0
+    # via jupyter-core
+prompt-toolkit==3.0.52
+    # via ipython
+psutil==7.0.0
+    # via ipykernel
+ptyprocess==0.7.0
+    # via pexpect
+pure-eval==0.2.3
+    # via stack-data
+pybtex==0.25.1
+    # via
+    #   pybtex-docutils
+    #   sphinxcontrib-bibtex
+pybtex-docutils==1.0.3
+    # via sphinxcontrib-bibtex
+pygments==2.19.2
+    # via
+    #   ipython
+    #   ipython-pygments-lexers
+    #   nbconvert
+    #   sphinx
+python-dateutil==2.9.0.post0
+    # via jupyter-client
+pyyaml==6.0.2
+    # via pybtex
+pyzmq==27.1.0
+    # via
+    #   ipykernel
+    #   jupyter-client
+referencing==0.36.2
+    # via
+    #   jsonschema
+    #   jsonschema-specifications
+requests==2.32.5
+    # via sphinx
+rpds-py==0.27.1
+    # via
+    #   jsonschema
+    #   referencing
+six==1.17.0
+    # via python-dateutil
+snowballstemmer==3.0.1
+    # via sphinx
+soupsieve==2.8
+    # via beautifulsoup4
+sphinx==8.1.3
+    # via
+    #   -r docs/requirements.in
+    #   jupyter-sphinx
+    #   nbsphinx
+    #   sphinx-hoverxref
+    #   sphinx-rtd-theme
+    #   sphinxcontrib-bibtex
+    #   sphinxcontrib-jquery
+sphinx-hoverxref==1.4.2
+    # via -r docs/requirements.in
+sphinx-rtd-theme==3.0.2
+    # via -r docs/requirements.in
+sphinxcontrib-applehelp==2.0.0
+    # via sphinx
+sphinxcontrib-bibtex==2.6.5
+    # via -r docs/requirements.in
+sphinxcontrib-devhelp==2.0.0
+    # via sphinx
+sphinxcontrib-htmlhelp==2.1.0
+    # via sphinx
+sphinxcontrib-jquery==4.1
+    # via
+    #   sphinx-hoverxref
+    #   sphinx-rtd-theme
+sphinxcontrib-jsmath==1.0.1
+    # via sphinx
+sphinxcontrib-qthelp==2.0.0
+    # via sphinx
+sphinxcontrib-serializinghtml==2.0.0
+    # via sphinx
+stack-data==0.6.3
+    # via ipython
+tinycss2==1.4.0
+    # via bleach
+tornado==6.5.2
+    # via
+    #   ipykernel
+    #   jupyter-client
+traitlets==5.14.3
+    # via
+    #   ipykernel
+    #   ipython
+    #   ipywidgets
+    #   jupyter-client
+    #   jupyter-core
+    #   matplotlib-inline
+    #   nbclient
+    #   nbconvert
+    #   nbformat
+    #   nbsphinx
+typing-extensions==4.15.0
+    # via beautifulsoup4
+urllib3==2.5.0
+    # via requests
+wcwidth==0.2.13
+    # via prompt-toolkit
+webencodings==0.5.1
+    # via
+    #   bleach
+    #   tinycss2
+widgetsnbextension==4.0.14
+    # via ipywidgets