Refine docs homepage and examples pages

Author: hiyama341

HISTORY.rst

@@ -1,53 +1,78 @@
 History
 -------
-0.3.4 (2024-10-01)
 
-From issues #16 - Including dependencies in Pypi package
-- Have updated setup.py file and dependencies are included in Pypi directly. 
+Unreleased
+~~~~~~~~~~
 
-Thanks to @manulera for raising this issue.   
+- Repaired and modernized the documentation with a Sphinx + PyData Sphinx Theme setup.
+- Added a cleaner front page, quickstart example, workflow gallery refresh, and improved Colab notebook links.
 
-0.3.3 (2023-11-08)
+1.0.5 (2026-03-15)
+~~~~~~~~~~~~~~~~~~
 
-- Updated readme file with extra examples
+- Added the Aspergillus CRISPR workflow notebook.
+- Introduced the ``teemi.legacy.build`` namespace to preserve older build helpers while simplifying the main build modules.
+- Added tests around CRISPR guide logic and sequence fetching.
 
-- Fixed setup.py file for installation of development packages like: pip install teemi[dev]
+1.0.4 (2026-03-14)
+~~~~~~~~~~~~~~~~~~
 
+- Updated the PyPI publishing workflow.
 
-0.3.2 (2023-01-08)
+1.0.3 (2026-03-14)
+~~~~~~~~~~~~~~~~~~
 
-This release features a re-factored DesignAssembly class with: 
+- Added roadmap and release documentation to support project planning and maintenance.
 
-- Simplified methods i.e. redundant methods have been removed.
+1.0.2 (2025-11-14)
+~~~~~~~~~~~~~~~~~~
 
-- The ability to add more than one pad, which can be used to make constructs with overlapping ends for for plasmid cloning.
- 
+- Fixed a small packaging/versioning issue in the release process.
 
-0.3.1 (2023-31-07)
-- This release failed due to a bug in the readme file.
+1.0.1 (2025-02-15)
+~~~~~~~~~~~~~~~~~~
 
+- Fixed a PyPI packaging syntax issue in the README metadata used during release.
 
-0.3.0 (2023-22-06)
+1.0.0 (2025-02-15)
 ~~~~~~~~~~~~~~~~~~
 
-* New submodules: gibson_cloning
+- Updated CI/test configuration around supported Python versions for the 1.0 release line.
 
-This module is used to perform simple Gibson cloning workflows. 
-While the addition of the "gibson_cloning" submodule is an exciting development, this module is still a work in progress.
-Next, a golden gate module. Keep posted on the progress. 
+0.5.1 (2024-10-01)
+~~~~~~~~~~~~~~~~~~
 
+- Updated packaging so project dependencies are included directly in the PyPI package.
 
-0.2.0 (2023-31-05)
+0.5.0 (2023-11-08)
 ~~~~~~~~~~~~~~~~~~
 
-* New submodules: CRISPRsequencecutter, sequence_finder. 
+- Expanded the README with more examples.
+- Fixed installation of development extras such as ``pip install teemi[dev]``.
+
+0.4.0 (2023-01-08)
+~~~~~~~~~~~~~~~~~~
 
-CRISPRSequenceCutter is a dataclass that is used to cut DNA through CRISPR-cas9 double-stranded break.
-SequenceFinder is a dataclass that finds upstream and downstream sequences from a sequence input, annotates them and saves them.
+- Refactored the ``DesignAssembly`` class.
+- Simplified redundant methods.
+- Added support for multiple pads when constructing assemblies.
 
-0.1.0 (2023-01-02)
+0.3.1 (2023-07-31)
 ~~~~~~~~~~~~~~~~~~
 
-* First release on PyPI.
+- Release attempt affected by a README bug.
 
+0.3.0 (2023-06-22)
+~~~~~~~~~~~~~~~~~~
+
+- Added the ``gibson_cloning`` submodule for simple Gibson cloning workflows.
+
+0.2.0 (2023-05-31)
+~~~~~~~~~~~~~~~~~~
+
+- Added the ``CRISPRsequencecutter`` and ``sequence_finder`` submodules.
+
+0.1.0 (2023-02-01)
+~~~~~~~~~~~~~~~~~~
 
+- First release on PyPI.

docs/_static/custom.css

@@ -5,26 +5,20 @@
   --teemi-border: #cbd5e1;
 }
 
-.bd-header-announcement {
-  background: linear-gradient(90deg, var(--teemi-accent-dark), var(--teemi-accent));
-  color: #f8fafc;
-}
-
 .bd-main .hero {
   margin: 0 0 2rem;
-  padding: 2rem;
-  border: 1px solid var(--teemi-border);
-  border-radius: 20px;
-  background:
-    radial-gradient(circle at top right, rgba(15, 118, 110, 0.18), transparent 32%),
-    linear-gradient(135deg, #f8fffe, var(--teemi-soft));
+  padding: 0.5rem 0 1rem;
+  border: 0;
+  border-radius: 0;
+  background: transparent;
 }
 
 .bd-main .hero h1 {
   margin: 0.25rem 0 1rem;
   font-size: clamp(2rem, 4vw, 3.2rem);
   line-height: 1.05;
   max-width: 12ch;
+  color: #e2e8f0;
 }
 
 .bd-main .hero-kicker {
@@ -39,6 +33,15 @@
 .bd-main .hero-lead {
   max-width: 58rem;
   font-size: 1.08rem;
+  color: #cbd5e1;
+}
+
+.bd-main .fair-callout {
+  max-width: 58rem;
+  margin: 0.25rem 0 2rem;
+  font-size: 1.34rem;
+  line-height: 1.5;
+  color: #e2e8f0;
 }
 
 .bd-main .link-grid {