references.bib

@misc{sciessai,
  author = {SCiessai},
  title = {【数据分享】2024年5月最新全国省市县行政区划shp数据，下载和处理过程，带审图号},
  year = {2024},
  url = {https://zhuanlan.zhihu.com/p/720041249}
}

@article{Goltsev2018,
  title = {Deep Profiling of Mouse Splenic Architecture with CODEX Multiplexed Imaging},
  volume = {174},
  ISSN = {0092-8674},
  url = {http://dx.doi.org/10.1016/j.cell.2018.07.010},
  DOI = {10.1016/j.cell.2018.07.010},
  number = {4},
  journal = {Cell},
  publisher = {Elsevier BV},
  author = {Goltsev,  Yury and Samusik,  Nikolay and Kennedy-Darling,  Julia and Bhate,  Salil and Hale,  Matthew and Vazquez,  Gustavo and Black,  Sarah and Nolan,  Garry P.},
  year = {2018},
  month = aug,
  pages = {968--981.e15}
}

@article{Lin2018,
  title = {Highly multiplexed immunofluorescence imaging of human tissues and tumors using t-CyCIF and conventional optical microscopes},
  volume = {7},
  ISSN = {2050-084X},
  url = {http://dx.doi.org/10.7554/eLife.31657},
  DOI = {10.7554/elife.31657},
  journal = {eLife},
  publisher = {eLife Sciences Publications,  Ltd},
  author = {Lin,  Jia-Ren and Izar,  Benjamin and Wang,  Shu and Yapp,  Clarence and Mei,  Shaolin and Shah,  Parin M and Santagata,  Sandro and Sorger,  Peter K},
  year = {2018},
  month = jul 
}

@article{Giesen2014,
  title = {Highly multiplexed imaging of tumor tissues with subcellular resolution by mass cytometry},
  volume = {11},
  ISSN = {1548-7105},
  url = {http://dx.doi.org/10.1038/nmeth.2869},
  DOI = {10.1038/nmeth.2869},
  number = {4},
  journal = {Nature Methods},
  publisher = {Springer Science and Business Media LLC},
  author = {Giesen,  Charlotte and Wang,  Hao A O and Schapiro,  Denis and Zivanovic,  Nevena and Jacobs,  Andrea and Hattendorf,  Bodo and Sch\"{u}ffler,  Peter J and Grolimund,  Daniel and Buhmann,  Joachim M and Brandt,  Simone and Varga,  Zsuzsanna and Wild,  Peter J and G\"{u}nther,  Detlef and Bodenmiller,  Bernd},
  year = {2014},
  month = mar,
  pages = {417–422}
}

@article{Gut2018,
  title = {Multiplexed protein maps link subcellular organization to cellular states},
  volume = {361},
  ISSN = {1095-9203},
  url = {http://dx.doi.org/10.1126/science.aar7042},
  DOI = {10.1126/science.aar7042},
  number = {6401},
  journal = {Science},
  publisher = {American Association for the Advancement of Science (AAAS)},
  author = {Gut,  Gabriele and Herrmann,  Markus D. and Pelkmans,  Lucas},
  year = {2018},
  month = aug 
}

@article{Wu2026,
  title = {iCLAP: an innovative method for integrable co-detection of low-abundance antigens with high-plex immunostaining},
  ISSN = {2041-1723},
  url = {http://dx.doi.org/10.1038/s41467-026-69752-y},
  DOI = {10.1038/s41467-026-69752-y},
  journal = {Nature Communications},
  publisher = {Springer Science and Business Media LLC},
  author = {Wu,  Fan and Zheng,  Shuyuan and Chen,  Yani and Ye,  Peijia and Kim,  Moo Joong and Lee,  Seojin and Kuo,  Geroge and Pillan,  Shriya and Yuan,  Ruihan and Han,  Kyu Sang and Yu,  Bofei and Zhu,  Qingfeng and Shin,  Sarah M. and Cannon,  Courtney D. and Pierre,  Gabriele and Iwasaki,  Kanako and Aguayo-Mazzucato,  Cristina and Musi,  Nicolas and Kuchel,  George A. and Schilling,  Birgit and Wood,  Laura D. and Ho,  Won Jin and Anders,  Robert A. and Wirtz,  Denis and Wu,  Pei-Hsun},
  year = {2026},
  month = feb 
}

@article{Kiemen2022,
  title = {CODA: quantitative 3D reconstruction of large tissues at cellular resolution},
  volume = {19},
  ISSN = {1548-7105},
  url = {http://dx.doi.org/10.1038/s41592-022-01650-9},
  DOI = {10.1038/s41592-022-01650-9},
  number = {11},
  journal = {Nature Methods},
  publisher = {Springer Science and Business Media LLC},
  author = {Kiemen,  Ashley L. and Braxton,  Alicia M. and Grahn,  Mia P. and Han,  Kyu Sang and Babu,  Jaanvi Mahesh and Reichel,  Rebecca and Jiang,  Ann C. and Kim,  Bridgette and Hsu,  Jocelyn and Amoa,  Falone and Reddy,  Sashank and Hong,  Seung-Mo and Cornish,  Toby C. and Thompson,  Elizabeth D. and Huang,  Peng and Wood,  Laura D. and Hruban,  Ralph H. and Wirtz,  Denis and Wu,  Pei-Hsun},
  year = {2022},
  month = oct,
  pages = {1490–1499}
}

@misc{denis-wirtz2026,
  author = {Denis and Wirtz},
  title = {},
  year = {2026},
  url = {https://bsky.app/profile/deniswirtz.bsky.social/post/3mg6kjndbx225}
}

@misc{Isaac2025,
  author = {Isaac and Vieco-Martí},
  title = {Issue exporting rotated rectangle ROI in QuPath - export includes bounding box instead of rotated shape},
  year = {2025},
  url = {https://forum.image.sc/t/issue-exporting-rotated-rectangle-roi-in-qupath-export-includes-bounding-box-instead-of-rotated-shape/117195/3}
}

@misc{QuPath_mrxs2026,
  author = {QuPath},
  title = {Supported image formats_MRXS (3D HISTECH)},
  year = {2026},
  url = {https://qupath.readthedocs.io/en/0.7/docs/intro/formats.html#mrxs-3d-histech}
}

@misc{iAmHealthy_mrxs,
  author = {iAmHealthy},
  title = {用QuPath打开mrxs格式切片图像的问题},
  year = {2026},
  url = {https://bioinfo-scitech-image-more1.netlify.app/2025-09-30_%E7%94%A8qupath%E6%89%93%E5%BC%80mrxs%E6%A0%BC%E5%BC%8F%E5%88%87%E7%89%87%E5%9B%BE%E5%83%8F%E7%9A%84%E9%97%AE%E9%A2%98}
}

@misc{iAmHealthy_alex,
  author = {iAmHealthy},
  title = {Alex Honnold徒手无保护攀爬台北101},
  year = {2026},
  url = {https://bioinfo-scitech-image-more1.netlify.app/2026-02-03_keep-climbing}
}

@article{Mielinis2021,
  title = {MuA-based Molecular Indexing for Rare Mutation Detection by Next-Generation Sequencing},
  volume = {433},
  ISSN = {0022-2836},
  url = {http://dx.doi.org/10.1016/j.jmb.2021.167209},
  DOI = {10.1016/j.jmb.2021.167209},
  number = {19},
  journal = {Journal of Molecular Biology},
  publisher = {Elsevier BV},
  author = {Mielinis,  Paulius and Sukackaitė,  Rasa and Serapinaitė,  Aistė and Samoilovas,  Faustas and Alzbutas,  Gediminas and Matjošaitis,  Karolis and Lubys,  Arvydas},
  year = {2021},
  month = sep,
  pages = {167209}
}

@misc{cnipa_figure-color,
  author = {国家知识产权局},
  title = {附图绘图形式要求},
  year = {2025},
  url = {https://www.cnipa.gov.cn/jact/front/mailpubdetail.do?transactId=489771&sysid=6}
}

@misc{paul_colors,
  author = {Paul Tol},
  title = {Introduction to Colour Schemes},
  year = {2021},
  url = {https://sronpersonalpages.nl/~pault/}
}

@misc{tenu,
  author = {Teun van den Brand},
  title = {ggplot2 styling},
  year = {2025},
  url = {https://tidyverse.org/blog/2025/10/ggplot2-styling/}
}

@misc{nicola_art-of-viz,
  author = {Nicola Rennie},
  title = {ggplot2 styling},
  year = {2025},
  url = {https://nrennie.rbind.io/art-of-viz/lemurs.html}
}

@misc{bik_einstein_fondation,
  title = {Einstein Foundation Individual Award Winner 2024},
  year = {2024},
  url = {https://award.einsteinfoundation.de/award-winners-finalists/recipients-2024/elisabeth-bik}
}

@misc{david_retraction,
  author = {Retraction watch staff},
  title = {Dana-Farber settles suit alleging image manipulation for $15 million},
  year = {2025-12-16},
  url = {https://retractionwatch.com/2025/12/16/dana-farber-settlement-false-claims-act-image-manipulation/}
}

@misc{Xiaoying_NatureCell,
  author = {Xiaoying You},
  title = {‘Student Geng’ ignites research-integrity scandal in China after calling out senior academics},
  year = {2026-06-12},
  url = {https://www.nature.com/articles/d41586-026-01902-0}
}

@article{Yang2026,
  title = {In vivo base editing of Chd3 rescues behavioural abnormalities in mice},
  volume = {651},
  ISSN = {1476-4687},
  url = {http://dx.doi.org/10.1038/s41586-026-10113-6},
  DOI = {10.1038/s41586-026-10113-6},
  number = {8106},
  journal = {Nature},
  publisher = {Springer Science and Business Media LLC},
  author = {Yang,  Kan and Li,  Wei-Ke and Geng,  Yi-Xiao and Zhang,  Shu-Qian and Wu,  Shi-Hao and Cheng,  Yan-Bo and Wang,  Jun-Wen and Xu,  Zhan-Kui and Wang,  Wen-Xin and Zhang,  Tan-Ying and Wang,  Pei-Ye and Yuan,  Yi-Ting and Fan,  Juan and Wu,  Jun and Xu,  Ruo-Chuan and Zhang,  Yue-Fang and Tao,  Gong-Jia and Li,  Zheng-Hui and Lin,  Chen-Xi and Li,  Tian-Shu and Zhang,  Xin-Yi and Li,  Jie and Zhang,  Ru and Yang,  Wen-Xiu and Wen,  Jia-Shuo and Yang,  Zun-Yuan and Gong,  Li and Zeng,  Wen and Du,  Ai-Lian and Li,  Jin-Song and Li,  Fei and Cheng,  Tian-Lin and Qiu,  Zilong},
  year = {2026},
  month = Feb,
  pages = {785–795}
}

@misc{packgene_nature,
  author = {PackGene},
  title = {In vivo base editing of Chd3 rescues behavioural abnormalities in mice},
  url = {https://www.packgene.cn/citation/in-vivo-base-editing-of-chd3-rescues-behavioural-abnormalities-in-mice/}
}

@misc{science_aav_girl,
  author = {Berndan Borrell and Retraction_watch},
  title = {A fatal reaction},
  year = {2026-07-23},
  url = {https://www.science.org/content/article/exclusive-death-girl-chinese-gene-editing-trial-was-never-made-public}
}

@misc{aav_patent,
  title = {Method for introducing gene into brain based on adeno-associated virus},
  url = {https://patentscope2.wipo.int/search/en/detail.jsf?docId=CN407798995&_cid=P12-MPW5TG-10166-1}
}