unknown error message

[Diamonds95]

hello! I saw your ngs-data-for-pathogen-analysis webpage and have really studied a lot! But when I try to use REALPHY to calling SNP, I get back this error message. Can you help me ? Thanks a lot!

[indexofire]

It's look like differ version of samtools or other type thing. I dont recommend REALPHY as a SNP calling pipeline with no long-term software stability. Sometimes if the tools is too old for the libs update too fast.

Take a shoot for "Snippy", I prefer it now for bacterial SNP calling.