Fixing memory issues w.r.t filtering columns before whole reads (preventing OOMs for larger datasets / files) #52

	name: CI

	on:
	push:
	branches: [main]
	pull_request:
	branches: [main]

	jobs:
	lint:
	name: Lint
	runs-on: ubuntu-latest
	steps:
	- uses: actions/checkout@v5
	- uses: actions/setup-python@v6
	with:
	python-version: "3.12"
	- name: Install ruff
	run: pip install ruff==0.16.0
	- name: Check formatting
	run: ruff format --check .
	- name: Check lint
	run: ruff check .

	test:
	name: Test (Python ${{ matrix.python-version }})
	runs-on: ubuntu-latest
	strategy:
	fail-fast: false
	matrix:
	python-version: ["3.10", "3.11", "3.12", "3.13"]
	steps:
	- uses: actions/checkout@v5
	- uses: actions/setup-python@v6
	with:
	python-version: ${{ matrix.python-version }}
	- name: Install package and test deps
	run: pip install -e ".[dev]"
	- name: Run tests
	run: pytest

	test-torch:
	name: Test torch extras (Python 3.12)
	runs-on: ubuntu-latest
	steps:
	- uses: actions/checkout@v5
	- uses: actions/setup-python@v6
	with:
	python-version: "3.12"
	- name: Install package with torch
	run: pip install -e ".[dev,torch,aws]"
	- name: Run all tests with coverage
	run: pytest --cov=skrec --cov-report=xml
	- name: Upload coverage
	uses: codecov/codecov-action@v5
	with:
	files: coverage.xml
	fail_ci_if_error: false

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