colorjam_function_notes.md

Organize / Simplify overall functions

Core user-facing functions

• col_div_xf

• col_linear_xf

• group2colors

• rainbowJam

• rainbowJamMulti - hide for now?

• scale_color_jam

• scale_fill_jam

• theme_jam

Useful color utilities

• add_colors
• blend_colors

Extra color utilities

• find_color_spread - (internal?)

• closestRcolor

• closest_named_color

• color_complement

• color_distance

• color_pie

• showDichromat

• colors_to_df

• sort_colors

• subset_colors

• combine_alphas - used by venndir (Todo: improve logic, allow darkening? allow color input?)

• show_color_distance - adds optional dependency on ComplexHeatmap

• vals2colorLevels

  • multienrichjam should migrate to col_div_xf()
  • used by legacy R/Rmd code

Probably should be internal-only (for now)

Hue warp / Preset / Step

• add_colorjam_preset
• add_colorjam_step
• adjust_hue_warp
• colorjam_presets
• colorjam_steps
• h2hw, hw2h, h2hwOptions
• hcl_to_hsl_hue, hsl_to_hcl_hue
• plot_colorjam_preset, plot_colorjam_steps
• remap_colorjam_preset
• validate_colorjam_preset
• vibrant_color_by_hue - used internally for presets?

Others

• approx_degrees
• display_degrees
• mean_angle
• jam_pal - used by ggplot2-related functions
• slot_colors
• twostep_gradient - not used by any jam packages

R-shiny app (for my own use mostly)

• colorjamShinyServer
• colorjamShinyUI
• launchColorjamShiny

Remove altogether?

• rainbowJam_v1

Comments

• Does col_div_xf() work with pheatmap?