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Updated Conceptual Workflow (Nov 2025)

Starting data

enrichResult from clusterProfiler, or
importIPAenrichment()

Run multiEnrichMap()

output: Mem

Run prepare_folio() (without plotting) or mem_plot_folio() (with plotting)

output: MemPlotFolio

Explore specific plots

GenePathHeatmap()
EnrichmentHeatmap()
CnetCollapsed()
CnetExemplar()
CnetCluster()

Create Cnet with Specific Pathways

mem2cnet(Mem)

Customize Cnet Layout

launch_shinycat()

Todo:

Custom mem2cnet()
mem2emap()
Custom mem2emap()