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kb_gtdbtk release notes

=========================

1.4.1


  • Fixed report generation and file post-processing issues

1.0.1


  • Reverting to most recent prior release to address the recurring bug from the new release 1.4.0

1.0.0


  • Update GTDB-Tk to v1.7.0
  • Added option to retain old Genome taxonomy
  • Added updated Genome objects to report

0.1.6


  • Update GTDB-Tk to v1.6.0
  • Update refdata to GTDB R06-RS202
  • Update FASTANI to v1.33
  • renamed GTDB-Tk Classify App method to run_kb_gtdbtk_classify_wf()
  • removed empty values from output html to make datatables happy
  • added unit tests for binnedcontigs, faster archaeal assemblySet, genome, and genomeSet
  • made input types clear
  • update Genome object taxon_assignment and taxonomy (if empty) with GTDB Classification

0.1.5


  • Update GTDB-Tk to v1.3.0
  • Update refdata to GTDB to R05-RS95
  • Update FastANI to v1.31

0.1.4


  • Fix typo in citations

0.1.3


  • Added citations to the publications section
  • Updated description

0.1.2


  • Update GTDB-Tk to version 1.1.0
  • Added GTDB-Tk version number to tooltip

0.1.1


  • Update GTDB-Tk version to 1.0.2
  • remove python 2.7 environment
  • changed input variable inputObjectRef to input_object_ref

0.1.0


  • Fixed a bug where workspace objects with pipe in the name would cause GTDB-Tk to fail.
  • Fixed a bug where binned contigs with arbitrary characters in the name could cause GTDB-Tk to fail.
  • Fixed copy of a copy / lost permissions issues.
  • Drastically reduced the size of the report zip file, which should speed up load time for the HTML report's first load.

0.0.6


  • Fix failing build

0.0.5


  • Updated to GTDB-Tk v0.3.3

0.0.4

  • update app description
  • added Donavan Parks as author & owner

0.0.3

  • fixed output display, file name scheme changed in new version of gtdbtk
  • updated author list of GTDB-Tk manuscript

0.0.2

  • minor change

0.0.1

  • Initial dev release
  • data version 89
  • gtdbtk version 0.3.2

0.0.0

  • Module created by kb-sdk init