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## Overview
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Baysor segments imaging-based spatial transcriptomics data using spatial position, local gene composition, and optional prior segmentation masks. This branch contains the native C++ implementation and is built with CMake.
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Baysor segments imaging-based spatial transcriptomics data using spatial position, local gene composition, and optional prior segmentation masks.
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This `cpp` branch is a native C++ port of the main Baysor implementation on [`master`](https://github.com/kharchenkolab/Baysor/tree/master). It is built with CMake.
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## Usage
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./build/baysor run --help
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```
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Example datasets and runnable commands live under:
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Example datasets and runnable commands:
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- `examples/iss`
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- `examples/osm-FISH`
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- `examples/STARmap`
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- [ISS](examples/iss/README.md)
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- [osm-FISH](examples/osm-FISH/README.md)
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- [STARmap](examples/STARmap/README.md)
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## Build
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