exec: Assuming unrestricted shared filesystem usage. host: runnervmjduv7 Building DAG of jobs... Your conda installation is not configured to use strict channel priorities. This is however important for having robust and correct environments (for details, see https://conda-forge.org/docs/user/tipsandtricks.html). Please consider to configure strict priorities by executing 'conda config --set channel_priority strict'. Creating conda environment /home/runner/.conda/lib/python3.13/site-packages/showyourwork/workflow/envs/tectonic.yml... Downloading and installing remote packages. Cleaning up conda package tarballs. Environment for /home/runner/.conda/lib/python3.13/site-packages/showyourwork/workflow/envs/tectonic.yml created (location: .snakemake/conda/2fb52c517e73e3ffcfc346ca7e168a92_) Using shell: /usr/bin/bash Provided cores: 1 (use --cores to define parallelism) Rules claiming more threads will be scaled down. Job stats: job count --------------------- ------- syw__main 1 syw__preprocess 1 syw__preprocess_setup 1 syw__preprocess_xml 1 total 4 Select jobs to execute... Execute 1 jobs... [Tue Feb 17 16:55:54 2026] Job 3: Preprocess: Setting up... Reason: Missing output files: /home/runner/work/clever-materials-hans/clever-materials-hans/.showyourwork/preprocess/showyourwork-logo.pdf, /home/runner/work/clever-materials-hans/clever-materials-hans/.showyourwork/preprocess/lineno.sty, /home/runner/work/clever-materials-hans/clever-materials-hans/.showyourwork/preprocess/xstring.sty, /home/runner/work/clever-materials-hans/clever-materials-hans/.showyourwork/preprocess/ms.tex, /home/runner/work/clever-materials-hans/clever-materials-hans/.showyourwork/preprocess/listofitems.tex, /home/runner/work/clever-materials-hans/clever-materials-hans/.showyourwork/preprocess/showyourwork-stamp.pdf, /home/runner/work/clever-materials-hans/clever-materials-hans/.showyourwork/preprocess/showyourwork.otf, /home/runner/work/clever-materials-hans/clever-materials-hans/.showyourwork/preprocess/xstring.tex, /home/runner/work/clever-materials-hans/clever-materials-hans/.showyourwork/preprocess/showyourwork.tex [Tue Feb 17 16:55:54 2026] Finished jobid: 3 (Rule: syw__preprocess_setup) 1 of 4 steps (25%) done Select jobs to execute... Execute 1 jobs... [Tue Feb 17 16:55:54 2026] Job 2: Preprocess: Generating XML tree... Reason: Missing output files: /home/runner/work/clever-materials-hans/clever-materials-hans/.showyourwork/preprocess/showyourwork.xml; Input files updated by another job: /home/runner/work/clever-materials-hans/clever-materials-hans/.showyourwork/preprocess, /home/runner/work/clever-materials-hans/clever-materials-hans/.showyourwork/preprocess/lineno.sty, /home/runner/work/clever-materials-hans/clever-materials-hans/.showyourwork/preprocess/xstring.sty, /home/runner/work/clever-materials-hans/clever-materials-hans/.showyourwork/preprocess/ms.tex, /home/runner/work/clever-materials-hans/clever-materials-hans/.showyourwork/preprocess/listofitems.tex, /home/runner/work/clever-materials-hans/clever-materials-hans/.showyourwork/preprocess/showyourwork-stamp.pdf, /home/runner/work/clever-materials-hans/clever-materials-hans/.showyourwork/preprocess/xstring.tex, /home/runner/work/clever-materials-hans/clever-materials-hans/.showyourwork/preprocess/showyourwork.otf, /home/runner/work/clever-materials-hans/clever-materials-hans/.showyourwork/preprocess/showyourwork.tex, /home/runner/work/clever-materials-hans/clever-materials-hans/.showyourwork/preprocess/showyourwork-logo.pdf Activating conda environment: .snakemake/conda/2fb52c517e73e3ffcfc346ca7e168a92_ warning: biolinum.sty:195: Requested font "[LinBiolinum_R.otf]/OT" at 10.94997pt warning: biolinum.sty:195: Requested font "[LinBiolinum_R.otf]/OT" at 10.95003pt warning: biolinum.sty:195: Requested font "[LinBiolinum_R.otf]/OT:script=latn;language=dflt;" at 10.95003pt warning: biolinum.sty:195: Requested font "[LinBiolinum_RB.otf]/OT:script=latn;language=dflt;" at 10.95003pt warning: biolinum