feat: unified runtime state, remove task graph, and add tool API #1528

Job	Run time
code-quality	25s
discover-env-tasks	7s
discover-tasks	7s
test-main	1m 35s
check-env-servers (ml)	1m 31s
check-env-servers (catalyst)	1m 30s
check-env-servers (resistor_network)	1m 17s
check-env-servers (spectra_elucidation)	1m 42s
check-env-servers (corral_md)	1m 11s
test-tasks (spectra_elucidation)	1m 52s
test-tasks (catalyst)	1m 38s
test-tasks (ml)	2m 4s
test-tasks (retrosynthesis)	1m 17s
test-tasks (resistor_network)	1m 40s
test-summary	2s
	17m 58s

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