feat: unified runtime state, remove task graph, and add tool API (#366) #1544

Job	Run time
code-quality	25s
test-main	1m 44s
discover-env-tasks	8s
discover-tasks	7s
check-env-servers (spectra_elucidation)	1m 41s
check-env-servers (catalyst)	1m 36s
check-env-servers (resistor_network)	1m 18s
check-env-servers (ml)	1m 37s
check-env-servers (corral_md)	1m 22s
test-tasks (resistor_network)	1m 38s
test-tasks (catalyst)	2m 14s
test-tasks (retrosynthesis)	1m 31s
test-tasks (ml)	1m 54s
test-tasks (spectra_elucidation)	1m 34s
test-summary	4s
	18m 53s

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