It was not possible for me to run the code on the HPC at my institution. I replicated all steps in the README page, even naming the .tsv file the same as in the example. Unfortunately, an error occurred:
I ran the following command in the hla_typing directory with "(snakemake)" at the start of the command line.
snakemake --use-conda --use-singularity --cores 1 typing/dataset_1.all.multihla
~/miniconda3/envs/snakemake/lib/python3.11/site-packages/google/protobuf/internal/api_implementation.py:110: UserWarning: Selected implementation cpp is not available.
warnings.warn(
Building DAG of jobs...
MissingRuleException:
No rule to produce typing/dataset_1.all.multihla (if you use input functions make sure that they don't raise unexpected exceptions).
Next to this, I got an error using exactly the same code as in the README page because the number of cores needed to be noted.
Can you help me?
Kind regards,
Adam
It was not possible for me to run the code on the HPC at my institution. I replicated all steps in the README page, even naming the .tsv file the same as in the example. Unfortunately, an error occurred:
I ran the following command in the hla_typing directory with "(snakemake)" at the start of the command line.
snakemake --use-conda --use-singularity --cores 1 typing/dataset_1.all.multihla
~/miniconda3/envs/snakemake/lib/python3.11/site-packages/google/protobuf/internal/api_implementation.py:110: UserWarning: Selected implementation cpp is not available.
warnings.warn(
Building DAG of jobs...
MissingRuleException:
No rule to produce typing/dataset_1.all.multihla (if you use input functions make sure that they don't raise unexpected exceptions).
Next to this, I got an error using exactly the same code as in the README page because the number of cores needed to be noted.
Can you help me?
Kind regards,
Adam