alphagenome-mcp/pyproject.toml at main · longevity-genie/alphagenome-mcp · GitHub

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[project]
name = "alphagenome-mcp"
version = "0.1.0"
description = "MCP server for Google DeepMind's AlphaGenome genomics predictions"
readme = "README.md"
authors = [
    { name = "antonkulaga", email = "antonkulaga@gmail.com" }
]
requires-python = ">=3.13"
dependencies = [
    "alphagenome>=0.1.0",
    "fastmcp>=2.10.6",
    "pycomfort>=0.0.18",
    "typer>=0.16.0",
    "eliot>=1.15.0",
    "pydantic>=2.0.0",
    "matplotlib>=3.5.0",
    "python-dotenv>=1.0.0",
    "pandas>=2.0.0",
    "pyarrow>=10.0.0",
]

[project.scripts]
alphagenome-mcp = "alphagenome_mcp.cli:app"
alphagenome-mcp-start = "alphagenome_mcp.server:app"


[build-system]
requires = ["hatchling"]
build-backend = "hatchling.build"

[dependency-groups]
dev = [
    "marimo>=0.14.13",
    "pytest>=7.0.0",
    "pytest-asyncio>=0.21.0",
    "httpx>=0.24.0",
    "ruff>=0.1.0",
    "mypy>=1.0.0",
    "types-requests>=2.0.0",
]

[tool.pytest.ini_options]
testpaths = ["tests"]
asyncio_mode = "auto"
markers = [
    "integration: marks tests as integration tests requiring API keys",
    "unit: marks tests as unit tests",
]

[tool.mypy]
python_version = "3.13"
warn_return_any = true
warn_unused_configs = true
disallow_untyped_defs = true
disallow_incomplete_defs = true
check_untyped_defs = true
disallow_untyped_decorators = true
no_implicit_optional = true
warn_redundant_casts = true
warn_unused_ignores = true
warn_no_return = true
warn_unreachable = true
strict_equality = true

[[tool.mypy.overrides]]
module = [
    "alphagenome.*",
    "matplotlib.*",
    "eliot.*",
    "fastmcp.*",
]
ignore_missing_imports = true