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‎batch_extract.json‎

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{"file":"data/output/meta/all_datasets_summary.tsv","datasets":4,"timestamp":1762994825.853128,"task_uuid":"5b444bbf-131f-4f56-95ee-175490ef353a","task_level":[8,7],"message_type":"combined_summary_created"}
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{"action_status":"succeeded","timestamp":1762994825.8536274,"task_uuid":"5b444bbf-131f-4f56-95ee-175490ef353a","action_type":"generate_species_summaries","task_level":[8,8]}
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{"action_status":"succeeded","timestamp":1762994825.85448,"task_uuid":"5b444bbf-131f-4f56-95ee-175490ef353a","action_type":"batch_extract_fields","task_level":[9]}
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{"input_dir":"data/input","output_dir":"data/output/meta","fields":"all_fields","action_status":"started","timestamp":1762999898.115299,"task_uuid":"188cbfcb-89f4-4ca8-8e0f-f4950904e751","action_type":"batch_extract_fields","task_level":[1]}
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{"count":4,"files":["15533333-bbe6-4b87-8a91-f13d5924e8ab.h5ad","9deda9ad-6a71-401e-b909-5263919d85f9.h5ad","10cc50a0-af80-4fa1-b668-893dd5c0113a.h5ad","00ff600e-6e2e-4d76-846f-0eec4f0ae417.h5ad"],"timestamp":1762999898.116257,"task_uuid":"188cbfcb-89f4-4ca8-8e0f-f4950904e751","task_level":[2],"message_type":"found_h5ad_files"}
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{"file":"15533333-bbe6-4b87-8a91-f13d5924e8ab.h5ad","output_path":"data/output/meta/15533333-bbe6-4b87-8a91-f13d5924e8ab_meta.parquet","timestamp":1762999898.1165977,"task_uuid":"188cbfcb-89f4-4ca8-8e0f-f4950904e751","task_level":[3],"message_type":"skipping_existing"}
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{"file":"9deda9ad-6a71-401e-b909-5263919d85f9.h5ad","output_path":"data/output/meta/9deda9ad-6a71-401e-b909-5263919d85f9_meta.parquet","timestamp":1762999898.1169086,"task_uuid":"188cbfcb-89f4-4ca8-8e0f-f4950904e751","task_level":[4],"message_type":"skipping_existing"}
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{"file":"10cc50a0-af80-4fa1-b668-893dd5c0113a.h5ad","output_path":"data/output/meta/10cc50a0-af80-4fa1-b668-893dd5c0113a_meta.parquet","timestamp":1762999898.1172602,"task_uuid":"188cbfcb-89f4-4ca8-8e0f-f4950904e751","task_level":[5],"message_type":"skipping_existing"}
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{"file":"00ff600e-6e2e-4d76-846f-0eec4f0ae417.h5ad","output_path":"data/output/meta/00ff600e-6e2e-4d76-846f-0eec4f0ae417_meta.parquet","timestamp":1762999898.117533,"task_uuid":"188cbfcb-89f4-4ca8-8e0f-f4950904e751","task_level":[6],"message_type":"skipping_existing"}
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{"total_files":4,"successful":4,"failed":0,"timestamp":1762999898.1177726,"task_uuid":"188cbfcb-89f4-4ca8-8e0f-f4950904e751","task_level":[7],"message_type":"batch_complete"}
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{"output_dir":"data/output/meta","format":"csv","action_status":"started","timestamp":1762999898.1180289,"task_uuid":"188cbfcb-89f4-4ca8-8e0f-f4950904e751","action_type":"generate_species_summaries","task_level":[8,1]}
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{"count":4,"timestamp":1762999898.1185145,"task_uuid":"188cbfcb-89f4-4ca8-8e0f-f4950904e751","task_level":[8,2],"message_type":"found_meta_files"}
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{"dataset_id":"9deda9ad-6a71-401e-b909-5263919d85f9","timestamp":1762999899.6712468,"task_uuid":"188cbfcb-89f4-4ca8-8e0f-f4950904e751","task_level":[8,3],"message_type":"organism_default_to_human"}
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{"dataset_id":"15533333-bbe6-4b87-8a91-f13d5924e8ab","timestamp":1762999900.690559,"task_uuid":"188cbfcb-89f4-4ca8-8e0f-f4950904e751","task_level":[8,4],"message_type":"organism_default_to_human"}
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{"dataset_id":"10cc50a0-af80-4fa1-b668-893dd5c0113a","timestamp":1762999900.9827085,"task_uuid":"188cbfcb-89f4-4ca8-8e0f-f4950904e751","task_level":[8,5],"message_type":"organism_default_to_human"}
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{"organism":"Homo sapiens","file":"data/output/meta/homo_sapiens_summary.csv","datasets":4,"format":"csv","timestamp":1762999901.0986383,"task_uuid":"188cbfcb-89f4-4ca8-8e0f-f4950904e751","task_level":[8,6],"message_type":"species_summary_created"}
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{"file":"data/output/meta/all_datasets_summary.csv","datasets":4,"format":"csv","timestamp":1762999901.1002629,"task_uuid":"188cbfcb-89f4-4ca8-8e0f-f4950904e751","task_level":[8,7],"message_type":"combined_summary_created"}
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{"timestamp":1762999901.100989,"task_uuid":"188cbfcb-89f4-4ca8-8e0f-f4950904e751","task_level":[8,8],"message_type":"temp_summaries_cleaned"}
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{"action_status":"succeeded","timestamp":1762999901.1742077,"task_uuid":"188cbfcb-89f4-4ca8-8e0f-f4950904e751","action_type":"generate_species_summaries","task_level":[8,9]}
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{"action_status":"succeeded","timestamp":1762999901.174991,"task_uuid":"188cbfcb-89f4-4ca8-8e0f-f4950904e751","action_type":"batch_extract_fields","task_level":[9]}

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