The README says that the input dataset should be in feature x sample format:
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parser.add_argument( |
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"--meta_csv", |
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required=True, |
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type=str, |
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help="csv file contained metabolomics values (must >= 0), each column is a sample and each row is a metabolite.", |
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) |
but read_and_preprocess from 'src/normae/cli.py' expect samples in rows:
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indice_inter = info_df.index.intersection(meta_df.index) |
The README says that the input dataset should be in feature x sample format:
NormAE/src/normae/cli.py
Lines 95 to 100 in 4f642d1
but
read_and_preprocessfrom 'src/normae/cli.py' expect samples in rows:NormAE/src/normae/cli.py
Line 41 in 4f642d1