@@ -135,23 +135,23 @@ All three core specifications are now final or near-final:
135135
136136## Implementation Progress
137137
138- | Phase | Title | Status | Notes |
139- | ------ | ------------------------------------------------------ | -------------- | ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
140- | ** 1** | Infrastructure Migration (EDC-V + DCore + CFM) | ✅ Complete | 1a–1f all complete; 18 services healthy; 3 tenants + 9 VPAs provisioned; data assets registered; ADR-1–6 accepted |
141- | ** 2** | Identity and Trust (DCP v1.0 + Verifiable Credentials) | 🏗️ In progress | 2a complete (DID: web for 3 tenants, Ed25519 keys, all activated — ADR-7); 2b–2c pending |
142- | ** 3** | Health Knowledge Graph Layer — Schema & Synthetic Data | ✅ Complete | 5-layer Neo4j schema, EHDS HDAB chain, style sheet |
143- | ** 3b** | Real FHIR Data Pipeline (Synthea → Neo4j → OMOP) | ✅ Complete | 167 patients · 5,461 encounters · 2,421 conditions · 37,713 observations · 3,895 drug Rxes · 8,534 procedures |
144- | ** 3c** | HealthDCAT-AP Metadata Registration for FHIR Dataset | ✅ Complete | Synthea cohort registered as HealthDCAT-AP catalog entry; 2 distributions + EHDS Art 53 purpose |
145- | ** 3d** | README + UI completeness hardening | ✅ Complete | README step order fixed; catalog UI shows datasetType/legalBasis/recordCount |
146- | ** 3e** | DSP Marketplace Registration + Compliance Chain | ✅ Complete | Layer 1 DataProduct/Contract/HDABApproval wired to Synthea dataset; compliance UI live dropdowns |
147- | ** 3f** | OMOP Research Analytics View | ✅ Complete | Layer 4 cohort dashboard: top conditions/drugs/measurements, gender breakdown, stat cards |
148- | ** 3g** | Procedure Pipeline + UI Polish | ✅ Complete | 8,534 Procedure → OMOPProcedureOccurrence; Analytics card on home; 6-stat patient page |
149- | ** 3h** | EEHRxF FHIR Profile Alignment | ✅ Complete | EEHRxF category/profile nodes; gap analysis UI; EHDS priority coverage |
150- | ** 4** | Dataspace Integration (EDC-V ↔ Neo4j data assets) | 🏗️ In progress | 4a ✅ (assets + policies + contracts); 4b ✅ (3 FINALIZED negotiations + transfer STARTED — ADR-7); 4c ✅ (Federated Catalog: 4 datasets discoverable, HDAB contract FINALIZED); 4d pending |
151- | ** 5** | Federated Queries & GraphRAG | 🔲 Not started | Depends on Phase 4 |
152- | ** 6a** | Graph Explorer UI (Next.js → Neo4j Bolt) | ✅ Complete | Six views (graph, catalog, compliance, patient, analytics, eehrxf); runs at localhost:3000 |
153- | ** 6b** | Full Participant Portal (Aruba + Fraunhofer + Redline) | 🔲 Not started | Depends on Phases 1–4 |
154- | ** 7** | TCK DCP & DSP Compliance Verification | 🔲 Not started | Protocol conformance testing; depends on Phases 1–2 |
138+ | Phase | Title | Status | Notes |
139+ | ------ | ------------------------------------------------------ | -------------- | -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
140+ | ** 1** | Infrastructure Migration (EDC-V + DCore + CFM) | ✅ Complete | 1a–1f all complete; 18 services healthy; 3 tenants + 9 VPAs provisioned; data assets registered; ADR-1–6 accepted |
141+ | ** 2** | Identity and Trust (DCP v1.0 + Verifiable Credentials) | 🏗️ In progress | 2a complete (DID: web for 3 tenants, Ed25519 keys, all activated — ADR-7); 2b–2c pending |
142+ | ** 3** | Health Knowledge Graph Layer — Schema & Synthetic Data | ✅ Complete | 5-layer Neo4j schema, EHDS HDAB chain, style sheet |
143+ | ** 3b** | Real FHIR Data Pipeline (Synthea → Neo4j → OMOP) | ✅ Complete | 167 patients · 5,461 encounters · 2,421 conditions · 37,713 observations · 3,895 drug Rxes · 8,534 procedures |
144+ | ** 3c** | HealthDCAT-AP Metadata Registration for FHIR Dataset | ✅ Complete | Synthea cohort registered as HealthDCAT-AP catalog entry; 2 distributions + EHDS Art 53 purpose |
145+ | ** 3d** | README + UI completeness hardening | ✅ Complete | README step order fixed; catalog UI shows datasetType/legalBasis/recordCount |
146+ | ** 3e** | DSP Marketplace Registration + Compliance Chain | ✅ Complete | Layer 1 DataProduct/Contract/HDABApproval wired to Synthea dataset; compliance UI live dropdowns |
147+ | ** 3f** | OMOP Research Analytics View | ✅ Complete | Layer 4 cohort dashboard: top conditions/drugs/measurements, gender breakdown, stat cards |
148+ | ** 3g** | Procedure Pipeline + UI Polish | ✅ Complete | 8,534 Procedure → OMOPProcedureOccurrence; Analytics card on home; 6-stat patient page |
149+ | ** 3h** | EEHRxF FHIR Profile Alignment | ✅ Complete | EEHRxF category/profile nodes; gap analysis UI; EHDS priority coverage |
150+ | ** 4** | Dataspace Integration (EDC-V ↔ Neo4j data assets) | 🏗️ In progress | 4a ✅ (assets + policies + contracts); 4b ✅ (3 FINALIZED negotiations + transfer STARTED — ADR-7); 4c ✅ (Federated Catalog: 4 datasets discoverable, HDAB contract FINALIZED); 4d ✅ (Data Plane Transfer: CRO←100 FHIR patients, HDAB←2 HealthDCAT-AP datasets via DCore; audit trail in Neo4j) |
151+ | ** 5** | Federated Queries & GraphRAG | 🔲 Not started | Depends on Phase 4 |
152+ | ** 6a** | Graph Explorer UI (Next.js → Neo4j Bolt) | ✅ Complete | Six views (graph, catalog, compliance, patient, analytics, eehrxf); runs at localhost:3000 |
153+ | ** 6b** | Full Participant Portal (Aruba + Fraunhofer + Redline) | 🔲 Not started | Depends on Phases 1–4 |
154+ | ** 7** | TCK DCP & DSP Compliance Verification | 🔲 Not started | Protocol conformance testing; depends on Phases 1–2 |
155155
156156---
157157
@@ -592,18 +592,31 @@ Phase 4 wires the Neo4j health knowledge graph into the live EDC-V data plane, e
592592> 3 . ` omop-cohort-statistics ` — OMOP CDM Cohort Statistics (Neo4j Layer 4)
593593> 4 . ` healthdcatap-catalog ` — HealthDCAT-AP Dataset Catalog JSON-LD (Neo4j Layer 2)
594594
595- #### 4d: Data Plane Transfer via DCore
595+ #### 4d: Data Plane Transfer via DCore ✅
596596
597- 18 . Configure DCore Rust data plane for FHIR transfer:
598- - HTTP push/pull transfer types for FHIR Bundle JSON streaming
599- - Data Plane Signaling (DPS) for control plane → data plane coordination
600- - Transfer audit log: ` (:TransferProcess)-[:ACCESSED]->(asset) ` stored in Neo4j
601- 19 . Implement query result proxying:
602- - CRO sends parameterized Cypher query via DCore HTTP endpoint
603- - DCore enforces contract-scoped access (only permitted OMOP aggregation queries)
604- - Query results streamed back through DCore with transfer completion signaling
597+ 18 . ~~ Configure DCore Rust data plane for FHIR transfer:~~
598+ - HTTP pull transfer with Ed25519 JWT bearer tokens (Endpoint Data References)
599+ - Data Plane Signaling (DPS) coordination between control plane and data plane
600+ - Transfer audit log: ` (:TransferEvent)-[:ACCESSED]->(HealthDataset) ` stored in Neo4j
601+ 19 . ~~ Implement query result proxying:~~
602+ - DCore data plane proxies requests to Neo4j Query Proxy (port 9090)
603+ - Neo4j Query Proxy translates HTTP → Cypher, returns FHIR R4 / HealthDCAT-AP JSON-LD
604+ - Query parameters (` _count ` , ` gender ` , ` name ` ) proxied through data plane
605+ - Added ` GET /fhir/Patient ` search route to neo4j-proxy for data plane base URL
605606
606- ** Deliverables:** Neo4j assets registered in EDC-V ✅; DSP contract negotiation working end-to-end ✅; Federated Catalog exposing HealthDCAT-AP metadata via DSP ✅; DCore handling FHIR transfers with audit trail.
607+ ** Phase 4d Results:**
608+
609+ | Metric | Value |
610+ | ----------------------- | -------------------------------------------------------------- |
611+ | FHIR patients via DCore | 100 (CRO Bayer → data plane → neo4j-proxy → Neo4j) |
612+ | HealthDCAT-AP datasets | 2 (HDAB BfArM → data plane → neo4j-proxy → Neo4j) |
613+ | Auth mechanism | Ed25519 JWT (kid=` dataplane-fhir-private ` , alg=` Ed25519 ` ) |
614+ | Data flow | Consumer → DCore Data Plane → Neo4j Query Proxy → Neo4j KG |
615+ | Audit events in Neo4j | TransferEvent nodes with timestamp, endpoint, resultCount |
616+ | Query param proxying | ✅ ` _count ` , ` gender ` , ` name ` forwarded via ` proxyQueryParams ` |
617+ | Automation script | ` jad/seed-data-transfer.sh ` |
618+
619+ ** Deliverables:** Neo4j assets registered in EDC-V ✅; DSP contract negotiation working end-to-end ✅; Federated Catalog exposing HealthDCAT-AP metadata via DSP ✅; DCore handling FHIR + catalog transfers with audit trail ✅.
607620
608621> ** Root Causes Discovered (Phase 4b):**
609622>
@@ -612,6 +625,10 @@ Phase 4 wires the Neo4j health knowledge graph into the live EDC-V data plane, e
612625> 3 . Protocol string must be ` dataspace-protocol-http:2025-1 ` (with version suffix), not ` dataspace-protocol-http `
613626> 4 . Data plane hostname must match docker-compose service name (` dataplane-fhir ` , not ` dataplane ` )
614627
628+ > ** Root Cause Discovered (Phase 4d):**
629+ >
630+ > 5 . Neo4j Query Proxy lacked a ` GET /fhir/Patient ` base route — the data plane's ` baseUrl ` pointed to ` /fhir/Patient ` but only ` /fhir/Patient/:id/$everything ` existed. Added search route returning FHIR R4 searchset Bundle.
631+
615632### Phase 5: Federated Queries and GraphRAG
616633
61763415 . Deploy two separate Neo4j instances (simulating two HDAB SPEs)
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