shacl again

Author: joergwa

.github/workflows/shacl.yaml

@@ -50,7 +50,7 @@ jobs:
                    tail -n +2 ids.txt > ids2.txt
                    grep -Fof ids2.txt merged-pmdco.ttl  | sort -u | grep  -Fvf - ids2.txt > missing.txt
                    if [ -s missing.txt ]; then
-                      echo "Missing following IRIs in PMDco:"
+                      echo "Found the following IRIs in the a-box, but they are not in PMDco:"
                       cat missing.txt
                       exit 1
                    fi

patterns/chemical composition/shape-data.ttl

@@ -7,8 +7,7 @@
 @prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
 @base <https://w3id.org/pmd/co/test/shape7#> .
 
-<https://w3id.org/pmd/co/test/shape7> rdf:type owl:Ontology ;
-                                                            owl:imports <https://w3id.org/pmd/co> .
+<https://w3id.org/pmd/co/test/shape7> rdf:type owl:Ontology .
 
 #################################################################
 #    Individuals
@@ -24,9 +23,9 @@ ex:chemical_composition_quality rdf:type owl:NamedIndividual ,
 ###  https://w3id.org/pmd/co/test/shape7/chemical_composition_specification
 ex:chemical_composition_specification rdf:type owl:NamedIndividual ,
                                                <https://w3id.org/pmd/co/PMD_0020004> ;
-                                      <http://purl.obolibrary.org/obo/BFO_0000178> ex:scalar_value_specification_C ,
+                                      <http://purl.obolibrary.org/obo/BFO_0000051> ex:scalar_value_specification_C ,
                                                                                    ex:scalar_value_specification_Fe ;
-                                      rdfs:label "chemical_composition_specification"@en .
+                                      rdfs:label "chemical_composition_specification 1"@en .
 
 
 ###  https://w3id.org/pmd/co/test/shape7/mass_proportion_carbon
@@ -36,6 +35,10 @@ ex:mass_proportion_carbon rdf:type owl:NamedIndividual ,
                           rdfs:label "mass_proportion_carbon"@en .
 
 
+<http://purl.obolibrary.org/obo/BFO_0000145> rdf:type owl:Class .
+<https://w3id.org/pmd/co/PMD_0020102> rdfs:subClassOf <http://purl.obolibrary.org/obo/BFO_0000145> .
+
+
 ###  https://w3id.org/pmd/co/test/shape7/mass_proportion_iron
 ex:mass_proportion_iron rdf:type owl:NamedIndividual ,
                                  <https://w3id.org/pmd/co/PMD_0020102> ;
@@ -47,7 +50,7 @@ ex:mass_proportion_iron rdf:type owl:NamedIndividual ,
 ex:portion_of_carbon rdf:type owl:NamedIndividual ,
                               <https://w3id.org/pmd/co/PMD_0020025> ;
                      <http://purl.obolibrary.org/obo/BFO_0000196> ex:mass_proportion_carbon ;
-                     rdfs:label "portion_of_carbon"@en .
+                     rdfs:label "portion of carbon"@en .
 
 
 ###  https://w3id.org/pmd/co/test/shape7/portion_of_iron