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7042 lines (5130 loc) · 312 KB
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<?xml version="1.0"?>
<rdf:RDF xmlns="https://w3id.org/pmd/cryo/"
xml:base="https://w3id.org/pmd/cryo/"
xmlns:dce="http://purl.org/dc/elements/1.1/"
xmlns:obo="http://purl.obolibrary.org/obo/"
xmlns:owl="http://www.w3.org/2002/07/owl#"
xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
xmlns:xml="http://www.w3.org/XML/1998/namespace"
xmlns:xsd="http://www.w3.org/2001/XMLSchema#"
xmlns:cryo="https://w3id.org/pmd/cryo/"
xmlns:qudt="http://qudt.org/schema/qudt/"
xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
xmlns:skos="http://www.w3.org/2004/02/skos/core#"
xmlns:swrla="http://swrl.stanford.edu/ontologies/3.3/swrla.owl#"
xmlns:dcterms="http://purl.org/dc/terms/"
xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#">
<owl:Ontology rdf:about="https://w3id.org/pmd/cryo/">
<owl:versionIRI rdf:resource="https://w3id.org/pmd/cryo/2026-08-01"/>
<dcterms:bibliographicCitation>cryo: Crystallography Subdomain Ontology. Version 2026-08-01, https://w3id.org/pmd/cryo/</dcterms:bibliographicCitation>
<dcterms:created>2026-08-01</dcterms:created>
<dcterms:creator rdf:resource="https://orcid.org/0000-0003-0744-8855"/>
<dcterms:creator rdf:resource="https://orcid.org/0009-0003-1503-4422"/>
<dcterms:description>CryO is an subdomain-level ontology based on the PMdco 3.x. It's primary goal to formally describe symmetries of crystal lattices and provide a semantic foundation for the annotation of .cif files.</dcterms:description>
<dcterms:license rdf:resource="https://creativecommons.org/licenses/by/4.0/"/>
<dcterms:title>CRYO PMD: Crystallography Subdomain Ontology based on PMDco 3.x</dcterms:title>
<owl:priorVersion rdf:resource="https://w3id.org/pmd/cryo/"/>
<owl:versionInfo>2026-08-01</owl:versionInfo>
</owl:Ontology>
<!--
///////////////////////////////////////////////////////////////////////////////////////
//
// Annotation properties
//
///////////////////////////////////////////////////////////////////////////////////////
-->
<!-- http://purl.obolibrary.org/obo/IAO_0000114 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000114"/>
<!-- http://purl.obolibrary.org/obo/IAO_0000115 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000115"/>
<!-- http://purl.obolibrary.org/obo/IAO_0000117 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000117"/>
<!-- http://purl.org/dc/terms/bibliographicCitation -->
<owl:AnnotationProperty rdf:about="http://purl.org/dc/terms/bibliographicCitation"/>
<!-- http://purl.org/dc/terms/created -->
<owl:AnnotationProperty rdf:about="http://purl.org/dc/terms/created"/>
<!-- http://purl.org/dc/terms/creator -->
<owl:AnnotationProperty rdf:about="http://purl.org/dc/terms/creator"/>
<!-- http://purl.org/dc/terms/description -->
<owl:AnnotationProperty rdf:about="http://purl.org/dc/terms/description">
<rdfs:label>description</rdfs:label>
</owl:AnnotationProperty>
<!-- http://purl.org/dc/terms/license -->
<owl:AnnotationProperty rdf:about="http://purl.org/dc/terms/license">
<rdfs:label>license</rdfs:label>
</owl:AnnotationProperty>
<!-- http://purl.org/dc/terms/title -->
<owl:AnnotationProperty rdf:about="http://purl.org/dc/terms/title">
<rdfs:label>title</rdfs:label>
</owl:AnnotationProperty>
<!-- http://qudt.org/schema/qudt/symbol -->
<owl:AnnotationProperty rdf:about="http://qudt.org/schema/qudt/symbol"/>
<!-- http://swrl.stanford.edu/ontologies/3.3/swrla.owl#isRuleEnabled -->
<owl:AnnotationProperty rdf:about="http://swrl.stanford.edu/ontologies/3.3/swrla.owl#isRuleEnabled"/>
<!-- http://www.geneontology.org/formats/oboInOwl#hasDbXref -->
<owl:AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#hasDbXref"/>
<!-- http://www.geneontology.org/formats/oboInOwl#hasExactSynonym -->
<owl:AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#hasExactSynonym"/>
<!-- http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym -->
<owl:AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym"/>
<!-- http://www.w3.org/2002/07/owl#qualifiedCardinality -->
<owl:AnnotationProperty rdf:about="http://www.w3.org/2002/07/owl#qualifiedCardinality"/>
<!-- http://www.w3.org/2004/02/skos/core#altLabel -->
<owl:AnnotationProperty rdf:about="http://www.w3.org/2004/02/skos/core#altLabel"/>
<!-- http://www.w3.org/2004/02/skos/core#definition -->
<owl:AnnotationProperty rdf:about="http://www.w3.org/2004/02/skos/core#definition"/>
<!-- http://www.w3.org/2004/02/skos/core#example -->
<owl:AnnotationProperty rdf:about="http://www.w3.org/2004/02/skos/core#example"/>
<!--
///////////////////////////////////////////////////////////////////////////////////////
//
// Datatypes
//
///////////////////////////////////////////////////////////////////////////////////////
-->
<!-- http://qudt.org/schema/qudt/LatexString -->
<rdfs:Datatype rdf:about="http://qudt.org/schema/qudt/LatexString"/>
<!--
///////////////////////////////////////////////////////////////////////////////////////
//
// Object Properties
//
///////////////////////////////////////////////////////////////////////////////////////
-->
<!-- http://purl.obolibrary.org/obo/BFO_0000050 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/BFO_0000050"/>
<!-- http://purl.obolibrary.org/obo/BFO_0000051 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/BFO_0000051"/>
<!-- http://purl.obolibrary.org/obo/IAO_0000219 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000219"/>
<!-- http://purl.obolibrary.org/obo/IAO_0000235 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000235"/>
<!-- http://purl.obolibrary.org/obo/OBI_0001927 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/OBI_0001927"/>
<!-- http://purl.obolibrary.org/obo/RO_0000080 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0000080"/>
<!-- http://purl.obolibrary.org/obo/RO_0000086 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0000086"/>
<!-- http://purl.obolibrary.org/obo/RO_0001015 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0001015"/>
<!-- http://purl.obolibrary.org/obo/RO_0001025 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0001025"/>
<!-- http://purl.obolibrary.org/obo/RO_0002350 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002350"/>
<!-- http://purl.obolibrary.org/obo/RO_0002351 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002351"/>
<!-- https://w3id.org/pmd/co/PMD_0000004 -->
<owl:ObjectProperty rdf:about="https://w3id.org/pmd/co/PMD_0000004">
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000122"/>
<obo:IAO_0000117>PERSON: Joerg Waitelonis</obo:IAO_0000117>
<rdfs:label xml:lang="en">is subject of</rdfs:label>
<skos:definition xml:lang="en">Inverse of 'is about'.</skos:definition>
</owl:ObjectProperty>
<!-- https://w3id.org/pmd/co/PMD_0000077 -->
<owl:ObjectProperty rdf:about="https://w3id.org/pmd/co/PMD_0000077">
<rdfs:subPropertyOf rdf:resource="https://w3id.org/pmd/co/PMD_0000004"/>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000122"/>
<obo:IAO_0000117>PERSON: Joerg Waitelonis</obo:IAO_0000117>
<rdfs:label xml:lang="en">specified by value</rdfs:label>
<skos:definition xml:lang="en">A relation between an entity and a value specification which is about this entity.</skos:definition>
</owl:ObjectProperty>
<!-- https://w3id.org/pmd/co/PMD_0025999 -->
<owl:ObjectProperty rdf:about="https://w3id.org/pmd/co/PMD_0025999"/>
<!-- https://w3id.org/pmd/cryo/CRYO_0000050 -->
<owl:ObjectProperty rdf:about="https://w3id.org/pmd/cryo/CRYO_0000050">
<rdfs:subPropertyOf rdf:resource="https://w3id.org/pmd/cryo/CRYO_0000053"/>
<rdfs:label xml:lang="en">is tetragonal</rdfs:label>
</owl:ObjectProperty>
<!-- https://w3id.org/pmd/cryo/CRYO_0000051 -->
<owl:ObjectProperty rdf:about="https://w3id.org/pmd/cryo/CRYO_0000051">
<rdfs:subPropertyOf rdf:resource="https://w3id.org/pmd/cryo/CRYO_0000164"/>
<rdfs:domain rdf:resource="https://w3id.org/pmd/cryo/CRYO_0000122"/>
<owl:propertyChainAxiom rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/IAO_0000235"/>
<rdf:Description rdf:about="https://w3id.org/pmd/cryo/CRYO_0000050"/>
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/RO_0002350"/>
<rdf:Description rdf:about="https://w3id.org/pmd/cryo/CRYO_0000050"/>
</owl:propertyChainAxiom>
<rdfs:comment>'denoted by' o 'member of' o 'has Miller indices family under tetragonal symmetry'</rdfs:comment>
<rdfs:label xml:lang="en">denoted by family under tetragonal symmetry</rdfs:label>
</owl:ObjectProperty>
<!-- https://w3id.org/pmd/cryo/CRYO_0000052 -->
<owl:ObjectProperty rdf:about="https://w3id.org/pmd/cryo/CRYO_0000052">
<rdfs:subPropertyOf rdf:resource="http://www.w3.org/2002/07/owl#topObjectProperty"/>
<owl:propertyChainAxiom rdf:parseType="Collection">
<rdf:Description rdf:about="https://w3id.org/pmd/cryo/CRYO_0000050"/>
<rdf:Description rdf:about="https://w3id.org/pmd/cryo/CRYO_0000152"/>
</owl:propertyChainAxiom>
<rdfs:label xml:lang="en">has Miller indices family under tetragonal symmetry</rdfs:label>
<owl:deprecated rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</owl:deprecated>
</owl:ObjectProperty>
<!-- https://w3id.org/pmd/cryo/CRYO_0000053 -->
<owl:ObjectProperty rdf:about="https://w3id.org/pmd/cryo/CRYO_0000053">
<rdfs:subPropertyOf rdf:resource="http://www.w3.org/2002/07/owl#topObjectProperty"/>
<rdfs:label xml:lang="de">has symmetry</rdfs:label>
</owl:ObjectProperty>
<!-- https://w3id.org/pmd/cryo/CRYO_0000054 -->
<owl:ObjectProperty rdf:about="https://w3id.org/pmd/cryo/CRYO_0000054">
<rdfs:subPropertyOf rdf:resource="https://w3id.org/pmd/cryo/CRYO_0000053"/>
<rdfs:label xml:lang="de">is triclinic</rdfs:label>
</owl:ObjectProperty>
<!-- https://w3id.org/pmd/cryo/CRYO_0000055 -->
<owl:ObjectProperty rdf:about="https://w3id.org/pmd/cryo/CRYO_0000055">
<rdfs:subPropertyOf rdf:resource="https://w3id.org/pmd/cryo/CRYO_0000053"/>
<rdfs:label xml:lang="de">is monoclinic</rdfs:label>
</owl:ObjectProperty>
<!-- https://w3id.org/pmd/cryo/CRYO_0000056 -->
<owl:ObjectProperty rdf:about="https://w3id.org/pmd/cryo/CRYO_0000056">
<rdfs:subPropertyOf rdf:resource="https://w3id.org/pmd/cryo/CRYO_0000053"/>
<rdfs:label xml:lang="de">is orthorhombic</rdfs:label>
</owl:ObjectProperty>
<!-- https://w3id.org/pmd/cryo/CRYO_0000057 -->
<owl:ObjectProperty rdf:about="https://w3id.org/pmd/cryo/CRYO_0000057">
<rdfs:subPropertyOf rdf:resource="https://w3id.org/pmd/cryo/CRYO_0000053"/>
<rdfs:label xml:lang="de">is rhombohedral</rdfs:label>
</owl:ObjectProperty>
<!-- https://w3id.org/pmd/cryo/CRYO_0000058 -->
<owl:ObjectProperty rdf:about="https://w3id.org/pmd/cryo/CRYO_0000058">
<rdfs:subPropertyOf rdf:resource="https://w3id.org/pmd/cryo/CRYO_0000053"/>
<rdfs:label xml:lang="de">is hexagonal</rdfs:label>
</owl:ObjectProperty>
<!-- https://w3id.org/pmd/cryo/CRYO_0000059 -->
<owl:ObjectProperty rdf:about="https://w3id.org/pmd/cryo/CRYO_0000059">
<rdfs:subPropertyOf rdf:resource="https://w3id.org/pmd/cryo/CRYO_0000164"/>
<rdfs:domain rdf:resource="https://w3id.org/pmd/cryo/CRYO_0000119"/>
<owl:propertyChainAxiom rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/IAO_0000235"/>
<rdf:Description rdf:about="https://w3id.org/pmd/cryo/CRYO_0000054"/>
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/RO_0002350"/>
<rdf:Description rdf:about="https://w3id.org/pmd/cryo/CRYO_0000054"/>
</owl:propertyChainAxiom>
<rdfs:label xml:lang="en">denoted by family under triclinic symmetry</rdfs:label>
</owl:ObjectProperty>
<!-- https://w3id.org/pmd/cryo/CRYO_0000060 -->
<owl:ObjectProperty rdf:about="https://w3id.org/pmd/cryo/CRYO_0000060">
<rdfs:subPropertyOf rdf:resource="https://w3id.org/pmd/cryo/CRYO_0000164"/>
<rdfs:domain rdf:resource="https://w3id.org/pmd/cryo/CRYO_0000120"/>
<owl:propertyChainAxiom rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/IAO_0000235"/>
<rdf:Description rdf:about="https://w3id.org/pmd/cryo/CRYO_0000055"/>
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/RO_0002350"/>
<rdf:Description rdf:about="https://w3id.org/pmd/cryo/CRYO_0000055"/>
</owl:propertyChainAxiom>
<rdfs:label xml:lang="de">denoted by family under monoclinic symmetry</rdfs:label>
</owl:ObjectProperty>
<!-- https://w3id.org/pmd/cryo/CRYO_0000061 -->
<owl:ObjectProperty rdf:about="https://w3id.org/pmd/cryo/CRYO_0000061">
<rdfs:subPropertyOf rdf:resource="https://w3id.org/pmd/cryo/CRYO_0000164"/>
<rdfs:domain rdf:resource="https://w3id.org/pmd/cryo/CRYO_0000121"/>
<owl:propertyChainAxiom rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/IAO_0000235"/>
<rdf:Description rdf:about="https://w3id.org/pmd/cryo/CRYO_0000056"/>
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/RO_0002350"/>
<rdf:Description rdf:about="https://w3id.org/pmd/cryo/CRYO_0000056"/>
</owl:propertyChainAxiom>
<rdfs:label xml:lang="de">denoted by family under orthorhombic symmetry</rdfs:label>
</owl:ObjectProperty>
<!-- https://w3id.org/pmd/cryo/CRYO_0000062 -->
<owl:ObjectProperty rdf:about="https://w3id.org/pmd/cryo/CRYO_0000062">
<rdfs:subPropertyOf rdf:resource="https://w3id.org/pmd/cryo/CRYO_0000164"/>
<rdfs:domain rdf:resource="https://w3id.org/pmd/cryo/CRYO_0000123"/>
<owl:propertyChainAxiom rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/IAO_0000235"/>
<rdf:Description rdf:about="https://w3id.org/pmd/cryo/CRYO_0000057"/>
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/RO_0002350"/>
<rdf:Description rdf:about="https://w3id.org/pmd/cryo/CRYO_0000057"/>
</owl:propertyChainAxiom>
<rdfs:label xml:lang="de">denoted by family under rhombohedral symmetry</rdfs:label>
</owl:ObjectProperty>
<!-- https://w3id.org/pmd/cryo/CRYO_0000063 -->
<owl:ObjectProperty rdf:about="https://w3id.org/pmd/cryo/CRYO_0000063">
<rdfs:subPropertyOf rdf:resource="https://w3id.org/pmd/cryo/CRYO_0000164"/>
<rdfs:domain rdf:resource="https://w3id.org/pmd/cryo/CRYO_0000129"/>
<owl:propertyChainAxiom rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/IAO_0000235"/>
<rdf:Description rdf:about="https://w3id.org/pmd/cryo/CRYO_0000058"/>
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/RO_0002350"/>
<rdf:Description rdf:about="https://w3id.org/pmd/cryo/CRYO_0000058"/>
</owl:propertyChainAxiom>
<rdfs:label xml:lang="de">denoted by family under hexagonal symmetry</rdfs:label>
</owl:ObjectProperty>
<!-- https://w3id.org/pmd/cryo/CRYO_0000152 -->
<owl:ObjectProperty rdf:about="https://w3id.org/pmd/cryo/CRYO_0000152">
<owl:inverseOf rdf:resource="https://w3id.org/pmd/cryo/CRYO_0000157"/>
<rdfs:domain rdf:resource="https://w3id.org/pmd/cryo/CRYO_0000124"/>
<rdfs:range>
<owl:Class>
<owl:unionOf rdf:parseType="Collection">
<rdf:Description rdf:about="https://w3id.org/pmd/cryo/CRYO_0000021"/>
<rdf:Description rdf:about="https://w3id.org/pmd/cryo/CRYO_0000023"/>
</owl:unionOf>
</owl:Class>
</rdfs:range>
<rdfs:label xml:lang="en">has Miller indices family</rdfs:label>
<owl:deprecated rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</owl:deprecated>
</owl:ObjectProperty>
<!-- https://w3id.org/pmd/cryo/CRYO_0000157 -->
<owl:ObjectProperty rdf:about="https://w3id.org/pmd/cryo/CRYO_0000157">
<rdfs:subPropertyOf rdf:resource="http://www.w3.org/2002/07/owl#topObjectProperty"/>
<rdfs:label xml:lang="en">Miller indices family of</rdfs:label>
<owl:deprecated rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</owl:deprecated>
</owl:ObjectProperty>
<!-- https://w3id.org/pmd/cryo/CRYO_0000158 -->
<owl:ObjectProperty rdf:about="https://w3id.org/pmd/cryo/CRYO_0000158">
<rdfs:subPropertyOf rdf:resource="http://www.w3.org/2002/07/owl#topObjectProperty"/>
<rdfs:domain rdf:resource="https://w3id.org/pmd/cryo/CRYO_0000124"/>
<rdfs:range rdf:resource="https://w3id.org/pmd/cryo/CRYO_0000028"/>
<rdfs:label xml:lang="en">under symmetry</rdfs:label>
<owl:deprecated rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</owl:deprecated>
</owl:ObjectProperty>
<!-- https://w3id.org/pmd/cryo/CRYO_0000162 -->
<owl:ObjectProperty rdf:about="https://w3id.org/pmd/cryo/CRYO_0000162">
<rdfs:subPropertyOf rdf:resource="http://www.w3.org/2002/07/owl#topObjectProperty"/>
<rdfs:domain rdf:resource="https://w3id.org/pmd/cryo/CRYO_0000143"/>
<rdfs:domain>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="https://w3id.org/pmd/cryo/CRYO_0000124"/>
<owl:Restriction>
<owl:onProperty rdf:resource="https://w3id.org/pmd/cryo/CRYO_0000158"/>
<owl:hasValue rdf:resource="https://w3id.org/pmd/cryo/CRYO_0000035"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</rdfs:domain>
<owl:propertyChainAxiom rdf:parseType="Collection">
<rdf:Description rdf:about="https://w3id.org/pmd/cryo/CRYO_0000170"/>
<rdf:Description rdf:about="https://w3id.org/pmd/cryo/CRYO_0000152"/>
</owl:propertyChainAxiom>
<rdfs:label xml:lang="en">has Miller indices family under cubic symmetry</rdfs:label>
<owl:deprecated rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</owl:deprecated>
</owl:ObjectProperty>
<!-- https://w3id.org/pmd/cryo/CRYO_0000164 -->
<owl:ObjectProperty rdf:about="https://w3id.org/pmd/cryo/CRYO_0000164">
<rdfs:subPropertyOf rdf:resource="http://www.w3.org/2002/07/owl#topObjectProperty"/>
<rdfs:range>
<owl:Class>
<owl:unionOf rdf:parseType="Collection">
<rdf:Description rdf:about="https://w3id.org/pmd/cryo/CRYO_0000021"/>
<rdf:Description rdf:about="https://w3id.org/pmd/cryo/CRYO_0000023"/>
</owl:unionOf>
</owl:Class>
</rdfs:range>
<rdfs:label xml:lang="en">denoted by family</rdfs:label>
</owl:ObjectProperty>
<!-- https://w3id.org/pmd/cryo/CRYO_0000168 -->
<owl:ObjectProperty rdf:about="https://w3id.org/pmd/cryo/CRYO_0000168">
<rdfs:subPropertyOf rdf:resource="https://w3id.org/pmd/cryo/CRYO_0000164"/>
<rdfs:domain rdf:resource="https://w3id.org/pmd/cryo/CRYO_0000041"/>
<owl:propertyChainAxiom rdf:parseType="Collection">
<rdf:Description rdf:about="https://w3id.org/pmd/cryo/CRYO_0000170"/>
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/IAO_0000235"/>
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/RO_0002350"/>
</owl:propertyChainAxiom>
<rdfs:label>denoted by family under cubic symmetry</rdfs:label>
</owl:ObjectProperty>
<!-- https://w3id.org/pmd/cryo/CRYO_0000170 -->
<owl:ObjectProperty rdf:about="https://w3id.org/pmd/cryo/CRYO_0000170">
<rdfs:subPropertyOf rdf:resource="https://w3id.org/pmd/cryo/CRYO_0000053"/>
<rdfs:label>is cubic</rdfs:label>
</owl:ObjectProperty>
<!--
///////////////////////////////////////////////////////////////////////////////////////
//
// Data properties
//
///////////////////////////////////////////////////////////////////////////////////////
-->
<!-- https://w3id.org/pmd/co/PMD_0000006 -->
<owl:DatatypeProperty rdf:about="https://w3id.org/pmd/co/PMD_0000006">
<rdfs:range rdf:resource="http://www.w3.org/2001/XMLSchema#double"/>
</owl:DatatypeProperty>
<!-- https://w3id.org/pmd/cryo/CRYO_0000016 -->
<owl:DatatypeProperty rdf:about="https://w3id.org/pmd/cryo/CRYO_0000016">
<rdfs:domain rdf:resource="https://w3id.org/pmd/cryo/CRYO_0000014"/>
<rdfs:range rdf:resource="http://www.w3.org/2001/XMLSchema#string"/>
<rdfs:label xml:lang="en">has Miller indices</rdfs:label>
<skos:definition xml:lang="en">has Miller indices is an annotation property to specify Miller indices of crystallographic plane, direction, or family of equivalent planes or directions</skos:definition>
</owl:DatatypeProperty>
<!-- https://w3id.org/pmd/cryo/CRYO_0000019 -->
<owl:DatatypeProperty rdf:about="https://w3id.org/pmd/cryo/CRYO_0000019">
<rdfs:subPropertyOf rdf:resource="https://w3id.org/pmd/co/PMD_0000006"/>
<rdfs:domain>
<owl:Class>
<owl:unionOf rdf:parseType="Collection">
<rdf:Description rdf:about="https://w3id.org/pmd/cryo/CRYO_0000020"/>
<rdf:Description rdf:about="https://w3id.org/pmd/cryo/CRYO_0000022"/>
</owl:unionOf>
</owl:Class>
</rdfs:domain>
<rdfs:comment xml:lang="en">Top-level data property, do not use directly</rdfs:comment>
<rdfs:label xml:lang="en">has Miller index</rdfs:label>
<skos:definition xml:lang="en">data property to point only to individual integers in the Miller indices notation only for single planes and directions</skos:definition>
</owl:DatatypeProperty>
<!-- https://w3id.org/pmd/cryo/CRYO_0000144 -->
<owl:DatatypeProperty rdf:about="https://w3id.org/pmd/cryo/CRYO_0000144">
<rdfs:label xml:lang="en">has space group notation</rdfs:label>
</owl:DatatypeProperty>
<!-- https://w3id.org/pmd/cryo/CRYO_0000145 -->
<owl:DatatypeProperty rdf:about="https://w3id.org/pmd/cryo/CRYO_0000145">
<rdfs:subPropertyOf rdf:resource="https://w3id.org/pmd/cryo/CRYO_0000144"/>
<rdfs:range rdf:resource="http://www.w3.org/2001/XMLSchema#integer"/>
<rdfs:label xml:lang="en">has international space group number</rdfs:label>
</owl:DatatypeProperty>
<!-- https://w3id.org/pmd/cryo/CRYO_0000146 -->
<owl:DatatypeProperty rdf:about="https://w3id.org/pmd/cryo/CRYO_0000146">
<rdfs:subPropertyOf rdf:resource="https://w3id.org/pmd/cryo/CRYO_0000144"/>
<rdfs:range rdf:resource="http://www.w3.org/2001/XMLSchema#string"/>
<rdfs:label xml:lang="en">has Hermann-Mauguin symbol</rdfs:label>
</owl:DatatypeProperty>
<!-- https://w3id.org/pmd/cryo/CRYO_0000147 -->
<owl:DatatypeProperty rdf:about="https://w3id.org/pmd/cryo/CRYO_0000147">
<rdfs:subPropertyOf rdf:resource="https://w3id.org/pmd/cryo/CRYO_0000144"/>
<rdfs:range rdf:resource="http://www.w3.org/2001/XMLSchema#string"/>
<rdfs:label xml:lang="en">has Hall symbol</rdfs:label>
</owl:DatatypeProperty>
<!-- https://w3id.org/pmd/cryo/CRYO_0000148 -->
<owl:DatatypeProperty rdf:about="https://w3id.org/pmd/cryo/CRYO_0000148">
<rdfs:subPropertyOf rdf:resource="https://w3id.org/pmd/cryo/CRYO_0000144"/>
<rdfs:range rdf:resource="http://www.w3.org/2001/XMLSchema#string"/>
<rdfs:label xml:lang="en">has Schoenflies symbol</rdfs:label>
</owl:DatatypeProperty>
<!-- https://w3id.org/pmd/cryo/CRYO_0000398 -->
<owl:DatatypeProperty rdf:about="https://w3id.org/pmd/cryo/CRYO_0000398">
<rdfs:subPropertyOf rdf:resource="https://w3id.org/pmd/cryo/CRYO_0000019"/>
<rdfs:range rdf:resource="http://www.w3.org/2001/XMLSchema#integer"/>
<rdfs:label xml:lang="en">has h</rdfs:label>
<skos:definition xml:lang="en">has h is a data property that associates a crystallographic plane with an integer representing its Miller index along the x-axis of the unit cell</skos:definition>
</owl:DatatypeProperty>
<!-- https://w3id.org/pmd/cryo/CRYO_0000399 -->
<owl:DatatypeProperty rdf:about="https://w3id.org/pmd/cryo/CRYO_0000399">
<rdfs:subPropertyOf rdf:resource="https://w3id.org/pmd/cryo/CRYO_0000019"/>
<rdfs:range rdf:resource="http://www.w3.org/2001/XMLSchema#integer"/>
<rdfs:label xml:lang="en">has l</rdfs:label>
<skos:definition xml:lang="en">has l is a data property that associates a crystallographic plane with an integer representing its Miller index along the z-axis of the unit cell</skos:definition>
</owl:DatatypeProperty>
<!-- https://w3id.org/pmd/cryo/CRYO_0000400 -->
<owl:DatatypeProperty rdf:about="https://w3id.org/pmd/cryo/CRYO_0000400">
<rdfs:subPropertyOf rdf:resource="https://w3id.org/pmd/cryo/CRYO_0000019"/>
<rdfs:range rdf:resource="http://www.w3.org/2001/XMLSchema#integer"/>
<rdfs:label xml:lang="en">has k</rdfs:label>
<skos:definition xml:lang="en">has k is a data property that associates a crystallographic plane with an integer representing its Miller index along the y-axis of the unit cell</skos:definition>
</owl:DatatypeProperty>
<!-- https://w3id.org/pmd/cryo/CRYO_0000401 -->
<owl:DatatypeProperty rdf:about="https://w3id.org/pmd/cryo/CRYO_0000401">
<rdfs:subPropertyOf rdf:resource="https://w3id.org/pmd/co/PMD_0000006"/>
<rdfs:domain rdf:resource="https://w3id.org/pmd/cryo/CRYO_0000024"/>
<rdfs:label xml:lang="en">has coordinate</rdfs:label>
<skos:definition xml:lang="en">has coordinate is a top-level data property to point to values of x-, y-, and z-coordinates in cortesian coordinate system</skos:definition>
</owl:DatatypeProperty>
<!-- https://w3id.org/pmd/cryo/CRYO_0000402 -->
<owl:DatatypeProperty rdf:about="https://w3id.org/pmd/cryo/CRYO_0000402">
<rdfs:subPropertyOf rdf:resource="https://w3id.org/pmd/cryo/CRYO_0000401"/>
<rdfs:label xml:lang="en">has x</rdfs:label>
<skos:definition xml:lang="en">has x is a data property that specifies the position of a point along the x-axis in cartesian coordinate system</skos:definition>
</owl:DatatypeProperty>
<!-- https://w3id.org/pmd/cryo/CRYO_0000403 -->
<owl:DatatypeProperty rdf:about="https://w3id.org/pmd/cryo/CRYO_0000403">
<rdfs:subPropertyOf rdf:resource="https://w3id.org/pmd/cryo/CRYO_0000401"/>
<rdfs:label xml:lang="en">has y</rdfs:label>
<skos:definition>has y is a data property that specifies the position of a point along the y-axis in cartesian coordinate system</skos:definition>
</owl:DatatypeProperty>
<!-- https://w3id.org/pmd/cryo/CRYO_0000404 -->
<owl:DatatypeProperty rdf:about="https://w3id.org/pmd/cryo/CRYO_0000404">
<rdfs:subPropertyOf rdf:resource="https://w3id.org/pmd/cryo/CRYO_0000401"/>
<rdfs:label xml:lang="en">has z</rdfs:label>
<skos:definition>has z is a data property that specifies the position of a point along the z-axis in cartesian coordinate system</skos:definition>
</owl:DatatypeProperty>
<!--
///////////////////////////////////////////////////////////////////////////////////////
//
// Classes
//
///////////////////////////////////////////////////////////////////////////////////////
-->
<!-- http://org.semanticweb.owlapi/error#Error1 -->
<owl:Class rdf:about="http://org.semanticweb.owlapi/error#Error1"/>
<!-- http://purl.obolibrary.org/obo/BFO_0000019 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/BFO_0000019"/>
<!-- http://purl.obolibrary.org/obo/BFO_0000024 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/BFO_0000024"/>
<!-- http://purl.obolibrary.org/obo/BFO_0000027 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/BFO_0000027"/>
<!-- http://purl.obolibrary.org/obo/BFO_0000029 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/BFO_0000029"/>
<!-- http://purl.obolibrary.org/obo/BFO_0000141 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/BFO_0000141"/>
<!-- http://purl.obolibrary.org/obo/BFO_0000142 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/BFO_0000142"/>
<!-- http://purl.obolibrary.org/obo/BFO_0000145 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/BFO_0000145"/>
<!-- http://purl.obolibrary.org/obo/BFO_0000146 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/BFO_0000146"/>
<!-- http://purl.obolibrary.org/obo/CHEBI_33250 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/CHEBI_33250"/>
<!-- http://purl.obolibrary.org/obo/IAO_0000003 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0000003"/>
<!-- http://purl.obolibrary.org/obo/IAO_0000027 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0000027"/>
<!-- http://purl.obolibrary.org/obo/IAO_0000030 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0000030"/>
<!-- http://purl.obolibrary.org/obo/OBI_0001930 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0001930"/>
<!-- http://purl.obolibrary.org/obo/UO_0000000 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/UO_0000000"/>
<!-- http://purl.obolibrary.org/obo/UO_0000019 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/UO_0000019">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UO_1000019"/>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/UO_0000027 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/UO_0000027">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UO_1000027"/>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/UO_0000047 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/UO_0000047">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UO_0000000"/>
<obo:IAO_0000115>A unit which is a standard measure of the amount of a 2-dimensional flat surface.</obo:IAO_0000115>
<rdfs:label>area unit</rdfs:label>
</owl:Class>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/UO_0000047"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000115"/>
<owl:annotatedTarget>A unit which is a standard measure of the amount of a 2-dimensional flat surface.</owl:annotatedTarget>
<oboInOwl:hasDbXref>UOC:GVG</oboInOwl:hasDbXref>
</owl:Axiom>
<!-- http://purl.obolibrary.org/obo/UO_0000185 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/UO_0000185">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UO_1000185"/>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/UO_0000324 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/UO_0000324">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UO_0000047"/>
<obo:IAO_0000115>An area unit which is equal to an area enclosed by a square with sides each 1 angstrom long.</obo:IAO_0000115>
<oboInOwl:hasRelatedSynonym>A^[2]</oboInOwl:hasRelatedSynonym>
<rdfs:label>square angstrom</rdfs:label>
</owl:Class>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/UO_0000324"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000115"/>
<owl:annotatedTarget>An area unit which is equal to an area enclosed by a square with sides each 1 angstrom long.</owl:annotatedTarget>
<oboInOwl:hasDbXref>UOC:GVG</oboInOwl:hasDbXref>
</owl:Axiom>
<!-- http://purl.obolibrary.org/obo/UO_1000019 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/UO_1000019">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UO_0000000"/>
<rdfs:label>angstrom based unit</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/UO_1000027 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/UO_1000027">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UO_0000000"/>
<rdfs:label>degree Celsius based unit</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/UO_1000185 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/UO_1000185">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/UO_0000000"/>
<rdfs:label>degree based unit</rdfs:label>
</owl:Class>
<!-- https://w3id.org/pmd/co/PMD_0000663 -->
<owl:Class rdf:about="https://w3id.org/pmd/co/PMD_0000663"/>
<!-- https://w3id.org/pmd/co/PMD_0020003 -->
<owl:Class rdf:about="https://w3id.org/pmd/co/PMD_0020003"/>
<!-- https://w3id.org/pmd/co/PMD_0020197 -->
<owl:Class rdf:about="https://w3id.org/pmd/co/PMD_0020197">
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000050"/>
<owl:someValuesFrom rdf:resource="https://w3id.org/pmd/cryo/CRYO_0000001"/>
</owl:Restriction>
</rdfs:subClassOf>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0001015"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/CHEBI_33250"/>
</owl:Restriction>
</rdfs:subClassOf>
</owl:Class>
<!-- https://w3id.org/pmd/cryo/CRYO_0000000 -->
<owl:Class rdf:about="https://w3id.org/pmd/cryo/CRYO_0000000">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/BFO_0000029"/>
<rdfs:label xml:lang="en">unit cell</rdfs:label>
<skos:definition xml:lang="en">Unit cell is a site which is a part of a crystal lattice and represents the smallest volume, from which the lattice can be constructed by translational displacements. Unit cell is characterized by the length of its sides and their angular relations.</skos:definition>
</owl:Class>
<!-- https://w3id.org/pmd/cryo/CRYO_0000001 -->
<owl:Class rdf:about="https://w3id.org/pmd/cryo/CRYO_0000001">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/BFO_0000029"/>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000051"/>
<owl:someValuesFrom rdf:resource="https://w3id.org/pmd/cryo/CRYO_0000000"/>
</owl:Restriction>
</rdfs:subClassOf>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0001015"/>
<owl:someValuesFrom rdf:resource="https://w3id.org/pmd/co/PMD_0020003"/>
</owl:Restriction>
</rdfs:subClassOf>
<rdfs:comment xml:lang="en">TODO:
1. check if located in is meant to be used this way
2. Is there a better alternative to has part?</rdfs:comment>
<rdfs:label xml:lang="en">crystal lattice</rdfs:label>
<skos:definition xml:lang="en">Crystal lattice is a site which has unit cell as part and is location of a crystal. It represents a periodic array of points in space, which describe the arrangement of atoms or molecules in a crystal.</skos:definition>
</owl:Class>
<!-- https://w3id.org/pmd/cryo/CRYO_0000002 -->
<owl:Class rdf:about="https://w3id.org/pmd/cryo/CRYO_0000002">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/BFO_0000019"/>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0000080"/>
<owl:allValuesFrom rdf:resource="https://w3id.org/pmd/cryo/CRYO_0000000"/>
</owl:Restriction>
</rdfs:subClassOf>
<rdfs:label xml:lang="en">lattice parameter</rdfs:label>
<skos:definition xml:lang="en">Lattice parameter is a quality of a unit cell which describes the length of (three) dimensions along of the unit cell's x-, y-, and z-directions.</skos:definition>
</owl:Class>
<!-- https://w3id.org/pmd/cryo/CRYO_0000003 -->