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updated ontology
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Lines changed: 336 additions & 170 deletions

‎cryo-base.owl‎

Lines changed: 30 additions & 14 deletions
Original file line numberDiff line numberDiff line change
@@ -4389,20 +4389,6 @@ The molar ratio of carbon dioxide to average atmosphere air is 420 ppm as of 202
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<owl:Class rdf:about="https://w3id.org/pmd/cryo/CRYO_0000014">
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<rdfs:subClassOf rdf:resource="https://w3id.org/pmd/co/PMD_0000501"/>
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<rdfs:subClassOf>
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<owl:Restriction>
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<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000219"/>
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<owl:someValuesFrom>
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<owl:Class>
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<owl:unionOf rdf:parseType="Collection">
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<rdf:Description rdf:about="https://w3id.org/pmd/cryo/CRYO_0000011"/>
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<rdf:Description rdf:about="https://w3id.org/pmd/cryo/CRYO_0000012"/>
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<rdf:Description rdf:about="https://w3id.org/pmd/cryo/CRYO_0000015"/>
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</owl:unionOf>
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</owl:Class>
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</owl:someValuesFrom>
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</owl:Restriction>
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</rdfs:subClassOf>
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<rdfs:subClassOf>
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<owl:Restriction>
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<owl:onProperty rdf:resource="https://w3id.org/pmd/cryo/CRYO_0000016"/>
@@ -4469,6 +4455,12 @@ The molar ratio of carbon dioxide to average atmosphere air is 420 ppm as of 202
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<owl:Class rdf:about="https://w3id.org/pmd/cryo/CRYO_0000020">
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<rdfs:subClassOf rdf:resource="https://w3id.org/pmd/cryo/CRYO_0000014"/>
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<rdfs:subClassOf>
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<owl:Restriction>
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<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000219"/>
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<owl:someValuesFrom rdf:resource="https://w3id.org/pmd/cryo/CRYO_0000012"/>
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</owl:Restriction>
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</rdfs:subClassOf>
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<rdfs:label xml:lang="en">direction Miller indices</rdfs:label>
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<skos:definition xml:lang="en">Direction Miller indices define the components of a sinlge vector in the given direction in a crystal&apos;s unit cell. Usually, direction Miller indices are reduced to the lowest set of integers. Direction Miller indices must be written in square brackets, e.g., [hkl].</skos:definition>
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<skos:example>[111]</skos:example>
@@ -4480,6 +4472,12 @@ The molar ratio of carbon dioxide to average atmosphere air is 420 ppm as of 202
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<owl:Class rdf:about="https://w3id.org/pmd/cryo/CRYO_0000021">
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<rdfs:subClassOf rdf:resource="https://w3id.org/pmd/cryo/CRYO_0000014"/>
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<rdfs:subClassOf>
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<owl:Restriction>
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<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000219"/>
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<owl:someValuesFrom rdf:resource="https://w3id.org/pmd/cryo/CRYO_0000012"/>
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</owl:Restriction>
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</rdfs:subClassOf>
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<rdfs:label xml:lang="en">family of directions Miller indices</rdfs:label>
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<skos:definition>&lt;111&gt;</skos:definition>
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<skos:definition xml:lang="en">Set of directions Miller indices define the components of symmetrically equivalent directions in a crystal lattice. Set of directions Miller indices must be written as &lt;hkl&gt;.</skos:definition>
@@ -4491,6 +4489,12 @@ The molar ratio of carbon dioxide to average atmosphere air is 420 ppm as of 202
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<owl:Class rdf:about="https://w3id.org/pmd/cryo/CRYO_0000022">
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<rdfs:subClassOf rdf:resource="https://w3id.org/pmd/cryo/CRYO_0000014"/>
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<rdfs:subClassOf>
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<owl:Restriction>
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<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000219"/>
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<owl:someValuesFrom rdf:resource="https://w3id.org/pmd/cryo/CRYO_0000011"/>
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</owl:Restriction>
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</rdfs:subClassOf>
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<rdfs:label xml:lang="en">plane Miller indices</rdfs:label>
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<skos:definition xml:lang="en">Plane Miller indices define the reciprocals of the fractional intercepts the plane makes with the crystallographic axes, reduced to the lowest set of integers.
44964500
For example, if a plane crosses [100] axis at 1/h, [010 ] axis at 1/k, and [001] axis at 1/l, then such plane is denoted as (hkl) plane. If a plane is parallel to one of the axes, then the corresponding Miller index is 0.
@@ -4504,6 +4508,12 @@ Plane Miller indices must be written in round brackets, e.g., (hkl).</skos:defin
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45054509
<owl:Class rdf:about="https://w3id.org/pmd/cryo/CRYO_0000023">
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<rdfs:subClassOf rdf:resource="https://w3id.org/pmd/cryo/CRYO_0000014"/>
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<rdfs:subClassOf>
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<owl:Restriction>
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<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000219"/>
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<owl:someValuesFrom rdf:resource="https://w3id.org/pmd/cryo/CRYO_0000011"/>
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</owl:Restriction>
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</rdfs:subClassOf>
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<rdfs:label xml:lang="en">family of planes Miller indices</rdfs:label>
45084518
<skos:definition xml:lang="en">Set of planes Miller indices define set of symmetrically equivalent planes. Set of planes must be written in curly brackets, e.g., {hkl}.</skos:definition>
45094519
<skos:example>{111}</skos:example>
@@ -4515,6 +4525,12 @@ Plane Miller indices must be written in round brackets, e.g., (hkl).</skos:defin
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<owl:Class rdf:about="https://w3id.org/pmd/cryo/CRYO_0000024">
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<rdfs:subClassOf rdf:resource="https://w3id.org/pmd/cryo/CRYO_0000014"/>
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<rdfs:subClassOf>
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<owl:Restriction>
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<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000219"/>
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<owl:someValuesFrom rdf:resource="https://w3id.org/pmd/cryo/CRYO_0000015"/>
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</owl:Restriction>
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</rdfs:subClassOf>
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<rdfs:label xml:lang="en">point Miller indices</rdfs:label>
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<skos:definition xml:lang="en">Point Miller indices define the coordinates of a point within a unit cell of a crystal. Point Miller indices must be given in round brackets separated by commas, e.g., (h, k, l).</skos:definition>
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<skos:example>(1,1,1)</skos:example>

‎cryo-base.ttl‎

Lines changed: 25 additions & 14 deletions
Original file line numberDiff line numberDiff line change
@@ -3143,15 +3143,6 @@ cryo:CRYO_0000013 rdf:type owl:Class ;
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### https://w3id.org/pmd/cryo/CRYO_0000014
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cryo:CRYO_0000014 rdf:type owl:Class ;
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rdfs:subClassOf co:PMD_0000501 ,
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[ rdf:type owl:Restriction ;
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owl:onProperty obo:IAO_0000219 ;
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owl:someValuesFrom [ rdf:type owl:Class ;
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owl:unionOf ( cryo:CRYO_0000011
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cryo:CRYO_0000012
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cryo:CRYO_0000015
3152-
)
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]
3154-
] ,
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[ rdf:type owl:Restriction ;
31563147
owl:onProperty cryo:CRYO_0000016 ;
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owl:cardinality "3"^^xsd:nonNegativeInteger
@@ -3200,23 +3191,35 @@ cryo:CRYO_0000015 rdf:type owl:Class ;
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32013192
### https://w3id.org/pmd/cryo/CRYO_0000020
32023193
cryo:CRYO_0000020 rdf:type owl:Class ;
3203-
rdfs:subClassOf cryo:CRYO_0000014 ;
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rdfs:subClassOf cryo:CRYO_0000014 ,
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[ rdf:type owl:Restriction ;
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owl:onProperty obo:IAO_0000219 ;
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owl:someValuesFrom cryo:CRYO_0000012
3198+
] ;
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rdfs:label "direction Miller indices"@en ;
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skos:definition "Direction Miller indices define the components of a sinlge vector in the given direction in a crystal's unit cell. Usually, direction Miller indices are reduced to the lowest set of integers. Direction Miller indices must be written in square brackets, e.g., [hkl]."@en ;
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skos:example "[111]" .
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32093204
### https://w3id.org/pmd/cryo/CRYO_0000021
32103205
cryo:CRYO_0000021 rdf:type owl:Class ;
3211-
rdfs:subClassOf cryo:CRYO_0000014 ;
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rdfs:subClassOf cryo:CRYO_0000014 ,
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[ rdf:type owl:Restriction ;
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owl:onProperty obo:IAO_0000219 ;
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owl:someValuesFrom cryo:CRYO_0000012
3210+
] ;
32123211
rdfs:label "family of directions Miller indices"@en ;
32133212
skos:definition "Set of directions Miller indices define the components of symmetrically equivalent directions in a crystal lattice. Set of directions Miller indices must be written as <hkl>."@en ,
32143213
"<111>" .
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32173216
### https://w3id.org/pmd/cryo/CRYO_0000022
32183217
cryo:CRYO_0000022 rdf:type owl:Class ;
3219-
rdfs:subClassOf cryo:CRYO_0000014 ;
3218+
rdfs:subClassOf cryo:CRYO_0000014 ,
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[ rdf:type owl:Restriction ;
3220+
owl:onProperty obo:IAO_0000219 ;
3221+
owl:someValuesFrom cryo:CRYO_0000011
3222+
] ;
32203223
rdfs:label "plane Miller indices"@en ;
32213224
skos:definition """Plane Miller indices define the reciprocals of the fractional intercepts the plane makes with the crystallographic axes, reduced to the lowest set of integers.
32223225
For example, if a plane crosses [100] axis at 1/h, [010 ] axis at 1/k, and [001] axis at 1/l, then such plane is denoted as (hkl) plane. If a plane is parallel to one of the axes, then the corresponding Miller index is 0.
@@ -3226,15 +3229,23 @@ Plane Miller indices must be written in round brackets, e.g., (hkl)."""@en ;
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32273230
### https://w3id.org/pmd/cryo/CRYO_0000023
32283231
cryo:CRYO_0000023 rdf:type owl:Class ;
3229-
rdfs:subClassOf cryo:CRYO_0000014 ;
3232+
rdfs:subClassOf cryo:CRYO_0000014 ,
3233+
[ rdf:type owl:Restriction ;
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owl:onProperty obo:IAO_0000219 ;
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owl:someValuesFrom cryo:CRYO_0000011
3236+
] ;
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rdfs:label "family of planes Miller indices"@en ;
32313238
skos:definition "Set of planes Miller indices define set of symmetrically equivalent planes. Set of planes must be written in curly brackets, e.g., {hkl}."@en ;
32323239
skos:example "{111}" .
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32343241

32353242
### https://w3id.org/pmd/cryo/CRYO_0000024
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cryo:CRYO_0000024 rdf:type owl:Class ;
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rdfs:subClassOf cryo:CRYO_0000014 ;
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rdfs:subClassOf cryo:CRYO_0000014 ,
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[ rdf:type owl:Restriction ;
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owl:onProperty obo:IAO_0000219 ;
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owl:someValuesFrom cryo:CRYO_0000015
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] ;
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rdfs:label "point Miller indices"@en ;
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skos:definition "Point Miller indices define the coordinates of a point within a unit cell of a crystal. Point Miller indices must be given in round brackets separated by commas, e.g., (h, k, l)."@en ;
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skos:example "(1,1,1)" .

‎cryo-full.owl‎

Lines changed: 30 additions & 14 deletions
Original file line numberDiff line numberDiff line change
@@ -6298,20 +6298,6 @@ The molar ratio of carbon dioxide to average atmosphere air is 420 ppm as of 202
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<owl:Class rdf:about="https://w3id.org/pmd/cryo/CRYO_0000014">
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<rdfs:subClassOf rdf:resource="https://w3id.org/pmd/co/PMD_0000501"/>
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<rdfs:subClassOf>
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<owl:Restriction>
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<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000219"/>
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<owl:someValuesFrom>
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<owl:Class>
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<owl:unionOf rdf:parseType="Collection">
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<rdf:Description rdf:about="https://w3id.org/pmd/cryo/CRYO_0000011"/>
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<rdf:Description rdf:about="https://w3id.org/pmd/cryo/CRYO_0000012"/>
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<rdf:Description rdf:about="https://w3id.org/pmd/cryo/CRYO_0000015"/>
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</owl:unionOf>
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</owl:Class>
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</owl:someValuesFrom>
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</owl:Restriction>
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</rdfs:subClassOf>
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<rdfs:subClassOf>
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<owl:Restriction>
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<owl:onProperty rdf:resource="https://w3id.org/pmd/cryo/CRYO_0000016"/>
@@ -6378,6 +6364,12 @@ The molar ratio of carbon dioxide to average atmosphere air is 420 ppm as of 202
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<owl:Class rdf:about="https://w3id.org/pmd/cryo/CRYO_0000020">
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<rdfs:subClassOf rdf:resource="https://w3id.org/pmd/cryo/CRYO_0000014"/>
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<rdfs:subClassOf>
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<owl:Restriction>
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<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000219"/>
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<owl:someValuesFrom rdf:resource="https://w3id.org/pmd/cryo/CRYO_0000012"/>
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</owl:Restriction>
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</rdfs:subClassOf>
63816373
<rdfs:label xml:lang="en">direction Miller indices</rdfs:label>
63826374
<skos:definition xml:lang="en">Direction Miller indices define the components of a sinlge vector in the given direction in a crystal&apos;s unit cell. Usually, direction Miller indices are reduced to the lowest set of integers. Direction Miller indices must be written in square brackets, e.g., [hkl].</skos:definition>
63836375
<skos:example>[111]</skos:example>
@@ -6389,6 +6381,12 @@ The molar ratio of carbon dioxide to average atmosphere air is 420 ppm as of 202
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<owl:Class rdf:about="https://w3id.org/pmd/cryo/CRYO_0000021">
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<rdfs:subClassOf rdf:resource="https://w3id.org/pmd/cryo/CRYO_0000014"/>
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<rdfs:subClassOf>
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<owl:Restriction>
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<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000219"/>
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<owl:someValuesFrom rdf:resource="https://w3id.org/pmd/cryo/CRYO_0000012"/>
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</owl:Restriction>
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</rdfs:subClassOf>
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<rdfs:label xml:lang="en">family of directions Miller indices</rdfs:label>
63936391
<skos:definition>&lt;111&gt;</skos:definition>
63946392
<skos:definition xml:lang="en">Set of directions Miller indices define the components of symmetrically equivalent directions in a crystal lattice. Set of directions Miller indices must be written as &lt;hkl&gt;.</skos:definition>
@@ -6400,6 +6398,12 @@ The molar ratio of carbon dioxide to average atmosphere air is 420 ppm as of 202
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<owl:Class rdf:about="https://w3id.org/pmd/cryo/CRYO_0000022">
64026400
<rdfs:subClassOf rdf:resource="https://w3id.org/pmd/cryo/CRYO_0000014"/>
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<rdfs:subClassOf>
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<owl:Restriction>
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<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000219"/>
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<owl:someValuesFrom rdf:resource="https://w3id.org/pmd/cryo/CRYO_0000011"/>
6405+
</owl:Restriction>
6406+
</rdfs:subClassOf>
64036407
<rdfs:label xml:lang="en">plane Miller indices</rdfs:label>
64046408
<skos:definition xml:lang="en">Plane Miller indices define the reciprocals of the fractional intercepts the plane makes with the crystallographic axes, reduced to the lowest set of integers.
64056409
For example, if a plane crosses [100] axis at 1/h, [010 ] axis at 1/k, and [001] axis at 1/l, then such plane is denoted as (hkl) plane. If a plane is parallel to one of the axes, then the corresponding Miller index is 0.
@@ -6413,6 +6417,12 @@ Plane Miller indices must be written in round brackets, e.g., (hkl).</skos:defin
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64146418
<owl:Class rdf:about="https://w3id.org/pmd/cryo/CRYO_0000023">
64156419
<rdfs:subClassOf rdf:resource="https://w3id.org/pmd/cryo/CRYO_0000014"/>
6420+
<rdfs:subClassOf>
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<owl:Restriction>
6422+
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000219"/>
6423+
<owl:someValuesFrom rdf:resource="https://w3id.org/pmd/cryo/CRYO_0000011"/>
6424+
</owl:Restriction>
6425+
</rdfs:subClassOf>
64166426
<rdfs:label xml:lang="en">family of planes Miller indices</rdfs:label>
64176427
<skos:definition xml:lang="en">Set of planes Miller indices define set of symmetrically equivalent planes. Set of planes must be written in curly brackets, e.g., {hkl}.</skos:definition>
64186428
<skos:example>{111}</skos:example>
@@ -6424,6 +6434,12 @@ Plane Miller indices must be written in round brackets, e.g., (hkl).</skos:defin
64246434

64256435
<owl:Class rdf:about="https://w3id.org/pmd/cryo/CRYO_0000024">
64266436
<rdfs:subClassOf rdf:resource="https://w3id.org/pmd/cryo/CRYO_0000014"/>
6437+
<rdfs:subClassOf>
6438+
<owl:Restriction>
6439+
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000219"/>
6440+
<owl:someValuesFrom rdf:resource="https://w3id.org/pmd/cryo/CRYO_0000015"/>
6441+
</owl:Restriction>
6442+
</rdfs:subClassOf>
64276443
<rdfs:label xml:lang="en">point Miller indices</rdfs:label>
64286444
<skos:definition xml:lang="en">Point Miller indices define the coordinates of a point within a unit cell of a crystal. Point Miller indices must be given in round brackets separated by commas, e.g., (h, k, l).</skos:definition>
64296445
<skos:example>(1,1,1)</skos:example>

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