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updated ontology
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Lines changed: 2088 additions & 345 deletions

‎cryo-base.owl‎

Lines changed: 58 additions & 11 deletions
Original file line numberDiff line numberDiff line change
@@ -12,15 +12,15 @@
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xmlns:skos="http://www.w3.org/2004/02/skos/core#"
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xmlns:dcterms="http://purl.org/dc/terms/">
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<owl:Ontology rdf:about="https://w3id.org/pmd/cryo/">
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<owl:versionIRI rdf:resource="https://w3id.org/pmd/cryo/2026-01-14"/>
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<owl:versionIRI rdf:resource="https://w3id.org/pmd/cryo/2026-01-16"/>
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<dce:type rdf:resource="http://purl.obolibrary.org/obo/IAO_8000001"/>
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<dcterms:bibliographicCitation>cryo: Crystallography Subdomain Ontology. Version 2026-01-14, https://w3id.org/pmd/cryo/</dcterms:bibliographicCitation>
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<dcterms:created>2026-01-14</dcterms:created>
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<dcterms:bibliographicCitation>cryo: Crystallography Subdomain Ontology. Version 2026-01-16, https://w3id.org/pmd/cryo/</dcterms:bibliographicCitation>
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<dcterms:created>2026-01-16</dcterms:created>
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<dcterms:description>None</dcterms:description>
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<dcterms:license rdf:resource="https://creativecommons.org/licenses/unspecified"/>
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<dcterms:title>CRYO PMD: Crystallography Subdomain Ontology based on PMDco 3.x</dcterms:title>
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<owl:priorVersion rdf:resource="https://w3id.org/pmd/cryo/"/>
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<owl:versionInfo>2026-01-14</owl:versionInfo>
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<owl:versionInfo>2026-01-16</owl:versionInfo>
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</owl:Ontology>
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@@ -1273,7 +1273,6 @@ Specific rates, e.g., tensile rate, cooling rate, etc. should be added as subcl
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<!-- https://w3id.org/pmd/co/PMD_0000583 -->
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<owl:Class rdf:about="https://w3id.org/pmd/co/PMD_0000583">
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<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/BFO_0000003"/>
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<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0000011"/>
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<rdfs:subClassOf>
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<owl:Class>
@@ -1400,9 +1399,11 @@ Specific rates, e.g., tensile rate, cooling rate, etc. should be added as subcl
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<owl:Class rdf:about="https://w3id.org/pmd/co/PMD_0000663">
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<rdfs:subClassOf rdf:resource="https://w3id.org/pmd/co/PMD_0020003"/>
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<rdfs:label xml:lang="de">Korn</rdfs:label>
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<rdfs:label xml:lang="en">crystal grain</rdfs:label>
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<skos:definition xml:lang="en">A crystal grain is a crystal that is continuant part of a polycrystal.</skos:definition>
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<rdfs:label xml:lang="en">crystallite</rdfs:label>
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<rdfs:label xml:lang="de">kristallit</rdfs:label>
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<skos:altLabel xml:lang="de">Korn</skos:altLabel>
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<skos:altLabel xml:lang="en">grain</skos:altLabel>
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<skos:definition xml:lang="en">A crystal grain is a crystal that is part of a polycrystal.</skos:definition>
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<co:PMD_0000060 rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</co:PMD_0000060>
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</owl:Class>
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@@ -1440,7 +1441,6 @@ Specific rates, e.g., tensile rate, cooling rate, etc. should be added as subcl
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</owl:intersectionOf>
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</owl:Class>
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</owl:equivalentClass>
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<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/BFO_0000003"/>
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<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0000011"/>
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<rdfs:subClassOf>
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<owl:Restriction>
@@ -1496,6 +1496,12 @@ A manufacturing process is always a transformative process.</skos:definition>
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<owl:Class rdf:about="https://w3id.org/pmd/co/PMD_0000853">
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<rdfs:subClassOf rdf:resource="https://w3id.org/pmd/co/PMD_0020131"/>
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<rdfs:subClassOf>
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<owl:Restriction>
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<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0000080"/>
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<owl:someValuesFrom rdf:resource="https://w3id.org/pmd/co/PMD_0020106"/>
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</owl:Restriction>
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</rdfs:subClassOf>
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<rdfs:label xml:lang="en">crystallographic texture</rdfs:label>
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<skos:definition xml:lang="en">The crystallographic texture is a morphological quality describing the arrangement and orientation of grains in a metallic material, observed through crystallographic analysis.</skos:definition>
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<co:PMD_0000060 rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</co:PMD_0000060>
@@ -1574,6 +1580,18 @@ A manufacturing process is always a transformative process.</skos:definition>
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<!-- https://w3id.org/pmd/co/PMD_0000890 -->
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<owl:Class rdf:about="https://w3id.org/pmd/co/PMD_0000890">
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<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/BFO_0000027"/>
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<rdfs:label xml:lang="en">connected material entity aggregate</rdfs:label>
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<skos:definition xml:lang="en">A material entity aggregate that is a mereological sum of separate material entities, which adhere to one another through chemical bonds or physical junctions that go beyond gravity.</skos:definition>
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<skos:example xml:lang="en">the atoms of a molecule, the molecules forming the membrane of a cell, the epidermis in a human body</skos:example>
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<co:PMD_0000060 rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</co:PMD_0000060>
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</owl:Class>
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<!-- https://w3id.org/pmd/co/PMD_0000896 -->
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<owl:Class rdf:about="https://w3id.org/pmd/co/PMD_0000896">
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<!-- https://w3id.org/pmd/co/PMD_0020106 -->
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<owl:Class rdf:about="https://w3id.org/pmd/co/PMD_0020106">
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<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/BFO_0000027"/>
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<rdfs:subClassOf rdf:resource="https://w3id.org/pmd/co/PMD_0000890"/>
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<rdfs:subClassOf>
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<owl:Restriction>
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<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000051"/>
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<owl:someValuesFrom rdf:resource="https://w3id.org/pmd/co/PMD_0000663"/>
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</owl:Restriction>
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</rdfs:subClassOf>
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<rdfs:label xml:lang="en">polycrystal</rdfs:label>
3560-
<skos:definition xml:lang="en">Polycrystal is an object aggregate that has continuant part some crystal grains</skos:definition>
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<skos:altLabel xml:lang="en">Polycrystalline structure</skos:altLabel>
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<skos:definition xml:lang="en">Polycrystal is a connected object aggregate that has continuant part some crystal grains</skos:definition>
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<co:PMD_0000060 rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</co:PMD_0000060>
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</owl:Class>
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@@ -4294,6 +4319,28 @@ Plane Miller indices must be written in round brackets, e.g., (hkl).</skos:defin
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<!-- https://w3id.org/pmd/cryo/CRYO_0000025 -->
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<owl:Class rdf:about="https://w3id.org/pmd/cryo/CRYO_0000025">
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<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/BFO_0000024"/>
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<rdfs:subClassOf>
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<owl:Restriction>
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<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000051"/>
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<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/CHEBI_33250"/>
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</owl:Restriction>
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</rdfs:subClassOf>
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<rdfs:subClassOf>
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<owl:Restriction>
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<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0001025"/>
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<owl:someValuesFrom rdf:resource="https://w3id.org/pmd/cryo/CRYO_0000011"/>
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</owl:Restriction>
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</rdfs:subClassOf>
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<rdfs:label xml:lang="en">atomic plane</rdfs:label>
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<skos:definition xml:lang="en">Atomic plane is a 2D fiat object part which has atoms as it parts and is located in some crystallogphic plane, i.e., the positions of atoms relative to each other are defined via the characterisitics of the crystallogphic plane.</skos:definition>
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</owl:Class>
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<!--
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///////////////////////////////////////////////////////////////////////////////////////
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//

‎cryo-base.ttl‎

Lines changed: 47 additions & 14 deletions
Original file line numberDiff line numberDiff line change
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@base <https://w3id.org/pmd/cryo/> .
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<https://w3id.org/pmd/cryo/> rdf:type owl:Ontology ;
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owl:versionIRI <https://w3id.org/pmd/cryo/2026-01-14> ;
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owl:versionIRI <https://w3id.org/pmd/cryo/2026-01-16> ;
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dce:type obo:IAO_8000001 ;
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dcterms:bibliographicCitation "cryo: Crystallography Subdomain Ontology. Version 2026-01-14, https://w3id.org/pmd/cryo/" ;
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dcterms:created "2026-01-14" ;
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dcterms:bibliographicCitation "cryo: Crystallography Subdomain Ontology. Version 2026-01-16, https://w3id.org/pmd/cryo/" ;
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dcterms:created "2026-01-16" ;
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dcterms:description "None" ;
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dcterms:license <https://creativecommons.org/licenses/unspecified> ;
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dcterms:title "CRYO PMD: Crystallography Subdomain Ontology based on PMDco 3.x" ;
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owl:priorVersion <https://w3id.org/pmd/cryo/> ;
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owl:versionInfo "2026-01-14" .
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owl:versionInfo "2026-01-16" .
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#################################################################
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# Annotation properties
@@ -871,8 +871,7 @@ co:PMD_0000553 rdf:type owl:Class ;
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### https://w3id.org/pmd/co/PMD_0000583
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co:PMD_0000583 rdf:type owl:Class ;
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rdfs:subClassOf obo:BFO_0000003 ,
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obo:OBI_0000011 ,
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rdfs:subClassOf obo:OBI_0000011 ,
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[ owl:intersectionOf ( [ rdf:type owl:Restriction ;
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owl:onProperty obo:OBI_0000293 ;
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owl:someValuesFrom obo:IAO_0000030
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### https://w3id.org/pmd/co/PMD_0000663
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co:PMD_0000663 rdf:type owl:Class ;
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rdfs:subClassOf co:PMD_0020003 ;
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rdfs:label "Korn"@de ,
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"crystal grain"@en ;
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skos:definition "A crystal grain is a crystal that is continuant part of a polycrystal."@en ;
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rdfs:label "crystallite"@en ,
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"kristallit"@de ;
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skos:altLabel "Korn"@de ,
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"grain"@en ;
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skos:definition "A crystal grain is a crystal that is part of a polycrystal."@en ;
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co:PMD_0000060 "true"^^xsd:boolean .
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@@ -995,8 +996,7 @@ co:PMD_0000833 rdf:type owl:Class ;
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) ;
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rdf:type owl:Class
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] ;
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rdfs:subClassOf obo:BFO_0000003 ,
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obo:OBI_0000011 ,
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rdfs:subClassOf obo:OBI_0000011 ,
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[ rdf:type owl:Restriction ;
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owl:onProperty obo:OBI_0000293 ;
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owl:someValuesFrom [ rdf:type owl:Class ;
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### https://w3id.org/pmd/co/PMD_0000853
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co:PMD_0000853 rdf:type owl:Class ;
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rdfs:subClassOf co:PMD_0020131 ;
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rdfs:subClassOf co:PMD_0020131 ,
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[ rdf:type owl:Restriction ;
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owl:onProperty obo:RO_0000080 ;
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owl:someValuesFrom co:PMD_0020106
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] ;
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rdfs:label "crystallographic texture"@en ;
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skos:definition "The crystallographic texture is a morphological quality describing the arrangement and orientation of grains in a metallic material, observed through crystallographic analysis."@en ;
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co:PMD_0000060 "true"^^xsd:boolean .
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co:PMD_0000060 "true"^^xsd:boolean .
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### https://w3id.org/pmd/co/PMD_0000890
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co:PMD_0000890 rdf:type owl:Class ;
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rdfs:subClassOf obo:BFO_0000027 ;
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rdfs:label "connected material entity aggregate"@en ;
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skos:definition "A material entity aggregate that is a mereological sum of separate material entities, which adhere to one another through chemical bonds or physical junctions that go beyond gravity."@en ;
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skos:example "the atoms of a molecule, the molecules forming the membrane of a cell, the epidermis in a human body"@en ;
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co:PMD_0000060 "true"^^xsd:boolean .
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### https://w3id.org/pmd/co/PMD_0000896
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co:PMD_0000896 rdf:type owl:Class ;
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rdfs:subClassOf co:PMD_0020131 ;
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### https://w3id.org/pmd/co/PMD_0020106
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co:PMD_0020106 rdf:type owl:Class ;
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rdfs:subClassOf obo:BFO_0000027 ;
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rdfs:subClassOf co:PMD_0000890 ,
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[ rdf:type owl:Restriction ;
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owl:onProperty obo:BFO_0000051 ;
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owl:someValuesFrom co:PMD_0000663
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] ;
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rdfs:label "polycrystal"@en ;
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skos:definition "Polycrystal is an object aggregate that has continuant part some crystal grains"@en ;
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skos:altLabel "Polycrystalline structure"@en ;
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skos:definition "Polycrystal is a connected object aggregate that has continuant part some crystal grains"@en ;
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co:PMD_0000060 "true"^^xsd:boolean .
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skos:example "(1,1,1)" .
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### https://w3id.org/pmd/cryo/CRYO_0000025
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:CRYO_0000025 rdf:type owl:Class ;
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rdfs:subClassOf obo:BFO_0000024 ,
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[ rdf:type owl:Restriction ;
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owl:onProperty obo:BFO_0000051 ;
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owl:someValuesFrom obo:CHEBI_33250
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] ,
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[ rdf:type owl:Restriction ;
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owl:onProperty obo:RO_0001025 ;
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owl:someValuesFrom :CRYO_0000011
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] ;
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rdfs:label "atomic plane"@en ;
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skos:definition "Atomic plane is a 2D fiat object part which has atoms as it parts and is located in some crystallogphic plane, i.e., the positions of atoms relative to each other are defined via the characterisitics of the crystallogphic plane."@en .
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#################################################################
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# Individuals
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#################################################################

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