still fixing the bug #15
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| # Basic ODK workflow | |
| name: build | |
| # Controls when the action will run. | |
| on: | |
| # Triggers the workflow on push or pull request events but only for the main branch | |
| push: | |
| branches: [main] | |
| # pull_request: | |
| # types: [closed] | |
| # Allows you to run this workflow manually from the Actions tab | |
| workflow_dispatch: | |
| # A workflow run is made up of one or more jobs that can run sequentially or in parallel | |
| jobs: | |
| # This workflow contains a single job called "ontology_qc" | |
| ontology_qc: | |
| # The type of runner that the job will run on | |
| runs-on: ubuntu-latest | |
| container: obolibrary/odkfull:v1.6 | |
| # Steps represent a sequence of tasks that will be executed as part of the job | |
| steps: | |
| # Checks-out your repository under $GITHUB_WORKSPACE, so your job can access it | |
| - uses: actions/checkout@v4 | |
| - name: ODK update | |
| run: cd src/ontology && odk.py update | |
| - name: Build ontology | |
| env: | |
| CRYO_TOKEN: ${{ secrets.CRYO_TOKEN }} | |
| DEFAULT_BRANCH: main | |
| run: cd src/ontology && make refresh-imports all_assets ROBOT_ENV='ROBOT_JAVA_ARGS=-Xmx6G' -vvv | |
| - name: Commit files # commit the src folder | |
| uses: EndBug/add-and-commit@v9 | |
| with: | |
| message: "updated ontology" | |
| cwd: "." # Crucial: Look at the whole repo | |
| add: "*.owl src/**/* --force" # Capture root owls and src folder | |
| default_author: github_actions |