ODK: Update repository configuration (make update_repo)

Author: github-actions[bot]

src/ontology/Makefile

@@ -10,7 +10,7 @@
 # More information: https://github.com/INCATools/ontology-development-kit/
 
 # Fingerprint of the configuration file when this Makefile was last generated
-CONFIG_HASH=                f6b6373a03fd447b43afd97211c2e30d5767a0491b3c06e49e1d4a253d3dad81
+CONFIG_HASH=                271e25fe84944489cd730d77d6260c3065fdef73b5172242dbebab08467f43f9
 
 
 # ----------------------------------------
@@ -188,7 +188,7 @@ all_main: $(MAIN_FILES)
 # ----------------------------------------
 
 
-IMPORTS =  pmdco logo tto
+IMPORTS =  pmdco logo tto uo cryo qudt
 
 IMPORT_ROOTS = $(patsubst %, $(IMPORTDIR)/%_import, $(IMPORTS))
 IMPORT_OWL_FILES = $(foreach n,$(IMPORT_ROOTS), $(n).owl)
@@ -516,6 +516,27 @@ mirror-tto: | $(TMPDIR)
 	$(ROBOT) convert -I https://raw.githubusercontent.com/materialdigital/tensile-test-ontology/refs/heads/main/tto-base.owl -o $(TMPDIR)/$@.owl
 
 
+## ONTOLOGY: uo
+.PHONY: mirror-uo
+.PRECIOUS: $(MIRRORDIR)/uo.owl
+mirror-uo: | $(TMPDIR)
+	$(ROBOT) convert -I https://raw.githubusercontent.com/bio-ontology-research-group/unit-ontology/refs/heads/master/uo-full.owl -o $(TMPDIR)/$@.owl
+
+
+## ONTOLOGY: cryo
+.PHONY: mirror-cryo
+.PRECIOUS: $(MIRRORDIR)/cryo.owl
+mirror-cryo: | $(TMPDIR)
+	$(ROBOT) convert -I https://raw.githubusercontent.com/cmllezr/crystallography-subdomain-ontology/refs/heads/main/cryo-full.owl -o $(TMPDIR)/$@.owl
+
+
+## ONTOLOGY: qudt
+.PHONY: mirror-qudt
+.PRECIOUS: $(MIRRORDIR)/qudt.owl
+mirror-qudt: | $(TMPDIR)
+	$(ROBOT) convert -I https://qudt.org/qudt-all -o $(TMPDIR)/$@.owl
+
+
 $(MIRRORDIR)/%.owl: mirror-% | $(MIRRORDIR)
 	if [ -f $(TMPDIR)/mirror-$*.owl ]; then if cmp -s $(TMPDIR)/mirror-$*.owl $@ ; then echo "Mirror identical, ignoring."; else echo "Mirrors different, updating." &&\
 		cp $(TMPDIR)/mirror-$*.owl $@; fi; fi

src/ontology/catalog-v001.xml

@@ -4,6 +4,9 @@
     <uri name="https://w3id.org/pmd/microstructure/imports/pmdco_import.owl" uri="imports/pmdco_import.owl" />
     <uri name="https://w3id.org/pmd/microstructure/imports/logo_import.owl" uri="imports/logo_import.owl" />
     <uri name="https://w3id.org/pmd/microstructure/imports/tto_import.owl" uri="imports/tto_import.owl" />
+    <uri name="https://w3id.org/pmd/microstructure/imports/uo_import.owl" uri="imports/uo_import.owl" />
+    <uri name="https://w3id.org/pmd/microstructure/imports/cryo_import.owl" uri="imports/cryo_import.owl" />
+    <uri name="https://w3id.org/pmd/microstructure/imports/qudt_import.owl" uri="imports/qudt_import.owl" />
     <uri name="https://w3id.org/pmd/microstructure/components/imports-edit.owl" uri="components/imports-edit.owl" />
     <uri name="https://w3id.org/pmd/microstructure/components/microstructure-shared.owl" uri="components/microstructure-shared.owl" />
     <uri name="https://w3id.org/pmd/microstructure/components/microstructure-axioms-shared.owl" uri="components/microstructure-axioms-shared.owl" />

src/ontology/imports/cryo_import.owl

@@ -0,0 +1,12 @@
+Prefix(:=<https://w3id.org/pmd/microstructure/imports/cryo_import.owl>)
+Prefix(obo:=<http://purl.obolibrary.org/obo/>)
+Prefix(owl:=<http://www.w3.org/2002/07/owl#>)
+Prefix(rdf:=<http://www.w3.org/1999/02/22-rdf-syntax-ns#>)
+Prefix(xml:=<http://www.w3.org/XML/1998/namespace>)
+Prefix(xsd:=<http://www.w3.org/2001/XMLSchema#>)
+Prefix(rdfs:=<http://www.w3.org/2000/01/rdf-schema#>)
+Prefix(oboInOwl:=<http://www.geneontology.org/formats/oboInOwl#>)
+
+Ontology(<https://w3id.org/pmd/microstructure/imports/cryo_import.owl>
+# This is a placeholder, it will be regenerated when makefile is first executed.
+)

src/ontology/imports/qudt_import.owl

@@ -0,0 +1,12 @@
+Prefix(:=<https://w3id.org/pmd/microstructure/imports/qudt_import.owl>)
+Prefix(obo:=<http://purl.obolibrary.org/obo/>)
+Prefix(owl:=<http://www.w3.org/2002/07/owl#>)
+Prefix(rdf:=<http://www.w3.org/1999/02/22-rdf-syntax-ns#>)
+Prefix(xml:=<http://www.w3.org/XML/1998/namespace>)
+Prefix(xsd:=<http://www.w3.org/2001/XMLSchema#>)
+Prefix(rdfs:=<http://www.w3.org/2000/01/rdf-schema#>)
+Prefix(oboInOwl:=<http://www.geneontology.org/formats/oboInOwl#>)
+
+Ontology(<https://w3id.org/pmd/microstructure/imports/qudt_import.owl>
+# This is a placeholder, it will be regenerated when makefile is first executed.
+)

src/ontology/imports/uo_import.owl

@@ -0,0 +1,12 @@
+Prefix(:=<https://w3id.org/pmd/microstructure/imports/uo_import.owl>)
+Prefix(obo:=<http://purl.obolibrary.org/obo/>)
+Prefix(owl:=<http://www.w3.org/2002/07/owl#>)
+Prefix(rdf:=<http://www.w3.org/1999/02/22-rdf-syntax-ns#>)
+Prefix(xml:=<http://www.w3.org/XML/1998/namespace>)
+Prefix(xsd:=<http://www.w3.org/2001/XMLSchema#>)
+Prefix(rdfs:=<http://www.w3.org/2000/01/rdf-schema#>)
+Prefix(oboInOwl:=<http://www.geneontology.org/formats/oboInOwl#>)
+
+Ontology(<https://w3id.org/pmd/microstructure/imports/uo_import.owl>
+# This is a placeholder, it will be regenerated when makefile is first executed.
+)

src/ontology/microstructure-edit.owl

@@ -18,9 +18,12 @@ Import(<https://w3id.org/pmd/microstructure/components/microstructure-defects.ow
 Import(<https://w3id.org/pmd/microstructure/components/microstructure-microscopy.owl>)
 Import(<https://w3id.org/pmd/microstructure/components/microstructure-phases.owl>)
 Import(<https://w3id.org/pmd/microstructure/components/microstructure-shared.owl>)
+Import(<https://w3id.org/pmd/microstructure/imports/cryo_import.owl>)
 Import(<https://w3id.org/pmd/microstructure/imports/logo_import.owl>)
 Import(<https://w3id.org/pmd/microstructure/imports/pmdco_import.owl>)
+Import(<https://w3id.org/pmd/microstructure/imports/qudt_import.owl>)
 Import(<https://w3id.org/pmd/microstructure/imports/tto_import.owl>)
+Import(<https://w3id.org/pmd/microstructure/imports/uo_import.owl>)
 Annotation(dcterms:description "PMD Core application ontology generated via ODK Template.
 ")
 Annotation(dcterms:license <https://w3id.org/pmd/microstructure.owl#CC-BY-4.0>)