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joergwajoergwa
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work 20.11.2025
1 parent df40358 commit 589ae2e

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Lines changed: 343 additions & 18 deletions

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‎.gitignore‎

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@@ -18,6 +18,11 @@ bin/
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/tto.obo
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/tto.json
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/tto.db
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/tto-base.*
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/tto-basic.*
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/tto-full.*
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/tto-simple.*
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/tto-simple-non-classified.*
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/mappings/
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/patterns/
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/reports/
@@ -70,3 +75,6 @@ docs/odk-workflows/RepositoryFileStructure.md
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/docs/odk-workflows
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/src/ontology/reports
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/src/ontology/tmp
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src/ontology/tmp/merged-tto-edit.ofn
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src/ontology/tmp/tto-preprocess.owl
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/src/ontology/tmp

‎src/ontology/Makefile‎

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@@ -10,7 +10,7 @@
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# More information: https://github.com/INCATools/ontology-development-kit/
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# Fingerprint of the configuration file when this Makefile was last generated
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CONFIG_HASH= d77eb61bd9c7297a6205cde171c4c0fb09911333d9ba28e1efe8d1f15001b298
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CONFIG_HASH= bb2f8a735b3caa7744c0e5024062bf5d7a0c187a3b19600be6beb77782c1eb90
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# ----------------------------------------
@@ -187,7 +187,7 @@ all_main: $(MAIN_FILES)
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# ----------------------------------------
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IMPORTS = pmdco
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IMPORTS = pmdco nfdicore
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IMPORT_ROOTS = $(patsubst %, $(IMPORTDIR)/%_import, $(IMPORTS))
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IMPORT_OWL_FILES = $(foreach n,$(IMPORT_ROOTS), $(n).owl)
@@ -387,7 +387,7 @@ $(IMPORTSEED): $(PRESEED) | $(TMPDIR)
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T_IMPORTSEED = --term-file $(IMPORTSEED)
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ANNOTATION_PROPERTIES=rdfs:label IAO:0000115 OMO:0002000
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ANNOTATION_PROPERTIES=rdfs:label rdfs:comment IAO:0000119 IAO:0000115 IAO:0000116 IAO:0000112 skos:definition skos:example skos:comment
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# ----------------------------------------
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# Import modules
@@ -426,6 +426,25 @@ $(IMPORTDIR)/pmdco_import.owl: $(MIRRORDIR)/pmdco.owl | all_robot_plugins
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repair --merge-axiom-annotations true \
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$(ANNOTATE_CONVERT_FILE)
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## Module for ontology: nfdicore (slme)
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$(IMPORTDIR)/nfdicore_import.owl: $(MIRRORDIR)/nfdicore.owl $(IMPORTDIR)/nfdicore_terms.txt $(IMPORTSEED) | all_robot_plugins
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$(ROBOT) annotate --input $< --remove-annotations \
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odk:normalize --add-source true \
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extract --term-file $(IMPORTDIR)/nfdicore_terms.txt $(T_IMPORTSEED) \
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--copy-ontology-annotations true --force true \
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--individuals include \
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--method SUBSET \
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remove $(foreach p, $(ANNOTATION_PROPERTIES), --term $(p)) \
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--term rdfs:label \
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--term IAO:0000115 \
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--term OMO:0002000 \
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--term-file $(IMPORTDIR)/nfdicore_terms.txt $(T_IMPORTSEED) \
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--select complement --select annotation-properties \
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odk:normalize --base-iri https://w3id.org/pmd \
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--subset-decls true --synonym-decls true \
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repair --merge-axiom-annotations true \
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$(ANNOTATE_CONVERT_FILE)
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endif # IMP=true
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.PHONY: refresh-imports
@@ -466,6 +485,13 @@ mirror-pmdco: | $(TMPDIR)
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$(ROBOT) convert -I https://w3id.org/pmd/co/3.0.0-alpha4 -o $(TMPDIR)/$@.owl
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## ONTOLOGY: nfdicore
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.PHONY: mirror-nfdicore
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.PRECIOUS: $(MIRRORDIR)/nfdicore.owl
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mirror-nfdicore: | $(TMPDIR)
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$(ROBOT) convert -I https://nfdi.fiz-karlsruhe.de/ontology -o $(TMPDIR)/$@.owl
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$(MIRRORDIR)/%.owl: mirror-% | $(MIRRORDIR)
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if [ -f $(TMPDIR)/mirror-$*.owl ]; then if cmp -s $(TMPDIR)/mirror-$*.owl $@ ; then echo "Mirror identical, ignoring."; else echo "Mirrors different, updating." &&\
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cp $(TMPDIR)/mirror-$*.owl $@; fi; fi

‎src/ontology/catalog-v001.xml‎

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<catalog xmlns="urn:oasis:names:tc:entity:xmlns:xml:catalog" prefer="public">
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<group id="odk-managed-catalog" prefer="public">
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<uri name="https://w3id.org/pmd/tto/imports/pmdco_import.owl" uri="imports/pmdco_import.owl" />
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<uri name="https://w3id.org/pmd/tto/imports/nfdicore_import.owl" uri="imports/nfdicore_import.owl" />
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</group>
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</catalog>

‎src/ontology/imports/nfdicore_import.owl‎

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‎src/ontology/imports/nfdicore_terms.txt‎

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https://nfdi.fiz-karlsruhe.de/ontology/NFDI_0000139 # funding organization role
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‎src/ontology/release.sh‎

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VERSION=3.0.0-alpha4
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VERSION=3.0.0
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PRIOR_VERSION=2.0.1
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ONTBASE=https://w3id.org/pmd/tto/
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ANNOTATE_ONTOLOGY_VERSION="annotate -V $ONTBASE$VERSION/\$@ --annotation owl:versionInfo $VERSION"

‎src/ontology/tto-edit.owl‎

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@@ -10,6 +10,7 @@ Prefix(dcterms:=<http://purl.org/dc/terms/>)
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Ontology(<https://w3id.org/pmd/tto/>
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Import(<https://w3id.org/pmd/tto/imports/nfdicore_import.owl>)
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Import(<https://w3id.org/pmd/tto/imports/pmdco_import.owl>)
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Annotation(dcterms:contributor "https://orcid.org/0000-0003-1649-6832")
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Annotation(dcterms:creator <https://orcid.org/0000-0001-7192-7143>)
@@ -26,6 +27,9 @@ The TTO was developed in the frame of the PMD project. The TTO provides conceptu
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Annotation(dcterms:license <http://creativecommons.org/licenses/by/4.0/>)
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Annotation(dcterms:title "Tensile Test Ontology (TTO)")
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Declaration(Class(<https://w3id.org/pmd/TTO_0000000>))
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Declaration(Class(<https://w3id.org/pmd/TTO_0000001>))
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Declaration(Class(<https://w3id.org/pmd/TTO_0000002>))
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Declaration(Class(:TTO_0000000))
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Declaration(Class(:TTO_0000001))
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Declaration(Class(:TTO_0000002))
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Declaration(Class(:TTO_0000052))
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Declaration(Class(:TTO_0000053))
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Declaration(Class(:TTO_0000054))
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Declaration(Class(:TTO_0000055))
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Declaration(Class(:TTO_0000056))
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Declaration(Class(:TTO_0000057))
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Declaration(Class(:TTO_0000058))
@@ -101,6 +104,32 @@ Declaration(AnnotationProperty(pmd:symbol))
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# Classes
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############################
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# Class: <https://w3id.org/pmd/TTO_0000000> (broken tested piece role)
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AnnotationAssertion(rdfs:label <https://w3id.org/pmd/TTO_0000000> "broken tested piece role"@en)
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SubClassOf(<https://w3id.org/pmd/TTO_0000000> pmd:PMD_0000975)
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SubClassOf(<https://w3id.org/pmd/TTO_0000000> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/OBI_0000312> pmd:PMD_0000974))
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# Class: <https://w3id.org/pmd/TTO_0000001> (unbroken tested piece role)
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AnnotationAssertion(rdfs:label <https://w3id.org/pmd/TTO_0000001> "unbroken tested piece role"@en)
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SubClassOf(<https://w3id.org/pmd/TTO_0000001> pmd:PMD_0000975)
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SubClassOf(<https://w3id.org/pmd/TTO_0000001> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/OBI_0000312> pmd:PMD_0000974))
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# Class: <https://w3id.org/pmd/TTO_0000002> (tensile test result)
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AnnotationAssertion(rdfs:label <https://w3id.org/pmd/TTO_0000002> "tensile test result"@en)
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SubClassOf(<https://w3id.org/pmd/TTO_0000002> <http://purl.obolibrary.org/obo/IAO_0000027>)
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SubClassOf(<https://w3id.org/pmd/TTO_0000002> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000051> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/IAO_0000109> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/IAO_0000136> ObjectIntersectionOf(pmd:PMD_0000618 ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0000080> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/BFO_0000030> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0000087> ObjectUnionOf(<https://w3id.org/pmd/TTO_0000000> <https://w3id.org/pmd/TTO_0000001>)))))))))
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# Class: pmd:PMD_0000974 (Zugprüfverfahren)
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SubClassOf(pmd:PMD_0000974 ObjectIntersectionOf(ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/OBI_0000299> <http://purl.obolibrary.org/obo/BFO_0000030>) ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0000087> ObjectUnionOf(<https://w3id.org/pmd/TTO_0000000> <https://w3id.org/pmd/TTO_0000001>))))
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SubClassOf(pmd:PMD_0000974 ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000055> pmd:PMD_0000975))
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SubClassOf(pmd:PMD_0000974 ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/OBI_0000293> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/BFO_0000030> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0000087> pmd:PMD_0000975))))
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SubClassOf(pmd:PMD_0000974 ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/OBI_0000299> <https://w3id.org/pmd/TTO_0000002>))
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SubClassOf(pmd:PMD_0000974 ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0000057> pmd:PMD_0000973))
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# Class: :TTO_0000000 (funder role)
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AnnotationAssertion(rdfs:label :TTO_0000000 "Förderungsrolle"@de)
@@ -260,7 +289,7 @@ AnnotationAssertion(<http://www.w3.org/2004/02/skos/core#definition> :TTO_000001
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AnnotationAssertion(<http://www.w3.org/2004/02/skos/core#definition> :TTO_0000015 "The length of a straight line through the center of an object (tensile test piece) as measured after a fracture occured during a test."@en)
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SubClassOf(:TTO_0000015 :TTO_0000002)
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# Class: :TTO_0000016 (Abgeschätzte Dehngeschwindigkeit Über Die Parallele Länge)
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# Class: :TTO_0000016 (estimated strain rate over the parallel length)
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AnnotationAssertion(rdfs:isDefinedBy :TTO_0000016 <https://w3id.org/pmd/tto>)
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AnnotationAssertion(rdfs:label :TTO_0000016 "Abgeschätzte Dehngeschwindigkeit Über Die Parallele Länge"@de)
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AnnotationAssertion(<http://www.w3.org/2004/02/skos/core#definition> :TTO_0000054 "Eine Zugversuchsmethode ist eine Planspezifikation, die die Durchführung eines kontrollierten Versuchs zur Bestimmung der mechanischen Eigenschaften eines Materials unter einachsiger Zugbelastung vorschreibt. Der Plan legt Verfahrensschritte, Bedingungen und Messkriterien fest, um Eigenschaften wie die Zugfestigkeit, die Streckgrenze und die Bruchdehnung zu bestimmen."@de)
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SubClassOf(:TTO_0000054 <http://purl.obolibrary.org/obo/IAO_0000104>)
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# Class: :TTO_0000055 (test piece)
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AnnotationAssertion(rdfs:isDefinedBy :TTO_0000055 <https://w3id.org/pmd/tto>)
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AnnotationAssertion(rdfs:label :TTO_0000055 "Prüfkörper"@de)
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AnnotationAssertion(rdfs:label :TTO_0000055 "test piece"@en)
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AnnotationAssertion(rdfs:seeAlso :TTO_0000055 <https://w3id.org/pmd/co/2.0.8/TestPiece>)
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AnnotationAssertion(<http://www.w3.org/2004/02/skos/core#definition> :TTO_0000055 "Part of a sample with specified dimensions, machined or un-machined, brought to a required condition for submission to a given test."@en)
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AnnotationAssertion(<http://www.w3.org/2004/02/skos/core#definition> :TTO_0000055 "Teil einer Probe mit bestimmten Dimensionen, bearbeitet oder unbearbeitet, der in einen erforderlichen Zustand gebracht wird, um einer bestimmten Prüfung unterzogen zu werden."@de)
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AnnotationAssertion(pmd:definitionSource :TTO_0000055 "EN 10021:2006-12 (European standardization committee: CEN/TC 459/SC 12/WG 4)")
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SubClassOf(:TTO_0000055 ObjectIntersectionOf(<http://purl.obolibrary.org/obo/BFO_0000030> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000196> pmd:PMD_0000975)))
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# Class: :TTO_0000056 (thickness after fracture)
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AnnotationAssertion(rdfs:isDefinedBy :TTO_0000056 <https://w3id.org/pmd/tto>)
@@ -794,7 +812,7 @@ AnnotationAssertion(<http://www.w3.org/2004/02/skos/core#definition> :TTO_000005
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AnnotationAssertion(<http://www.w3.org/2004/02/skos/core#definition> :TTO_0000057 "This entity describes a single point at which a transition from one condition or state to another occurs, e.g. the point at which different phases of matter are capable of existing together in equilibrium (also called inversion point) or if process parameters are changed that will lead to a transition of the process during its execution."@en)
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SubClassOf(:TTO_0000057 pmd:PMD_0000008)
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# Class: :TTO_0000058 (transition point testing rate)
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# Class: :TTO_0000058 (Umschaltpunkt der Prüfgeschwindigkeit)
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AnnotationAssertion(rdfs:isDefinedBy :TTO_0000058 <https://w3id.org/pmd/tto>)
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AnnotationAssertion(rdfs:label :TTO_0000058 "Umschaltpunkt der Prüfgeschwindigkeit"@de)

‎src/ontology/tto-odk.yaml‎

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remove_owl_nothing: true
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import_group:
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annotation_properties: ['rdfs:label','rdfs:comment', 'IAO:0000119','IAO:0000115', 'IAO:0000116', 'IAO:0000112', 'skos:definition', 'skos:example', 'skos:comment' ]
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products:
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- id: pmdco
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mirror_from: https://w3id.org/pmd/co/3.0.0-alpha4
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module_type: mirror
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- id: nfdicore
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mirror_from: https://nfdi.fiz-karlsruhe.de/ontology
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module_type: slme
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module_type_slme: SUBSET
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use_base: true

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