chore(main): release 4.5.2 #136
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| name: conda_build_envs | |
| on: [push, pull_request] | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| jobs: | |
| get_conda_envs: | |
| runs-on: ubuntu-latest | |
| outputs: | |
| env-files: ${{ steps.get_envs.outputs.env-files }} | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - id: get_envs | |
| name: list conda envs | |
| run: | | |
| files=$(find src/npr/rules_dorado/envs -type f | jq -R -s -c 'split("\n")[:-1]') | |
| echo "files set to: $files" | |
| echo "env-files=$files" >> $GITHUB_OUTPUT | |
| build: | |
| needs: get_conda_envs | |
| runs-on: ubuntu-latest | |
| strategy: | |
| matrix: | |
| env-file: ${{ fromJson(needs.get_conda_envs.outputs.env-files) }} | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: conda-incubator/setup-miniconda@v3 | |
| with: | |
| channels: conda-forge,bioconda | |
| channel-priority: true | |
| environment-file: ${{ matrix.env-file }} | |
| cache-downloads: true | |
| environment-name: snakemake_env_test | |
| activate-environment: snakemake_env_test | |
| conda-remove-defaults: true | |
| - name: conda info | |
| run: | | |
| conda info |