Scripts to get the most of the output of metagenome-atlas
Here are some scripts to analyze the output of metagenome-atlas >= v2.3
To get started download this repo.
git clone https://github.com/metagenome-atlas/atlas_analyze.git
cd atlas_analyze
Run simple ./setup.sh
Then activate the environment:
conda activate analyze
analyze.py path/to/atlas_workingdir
For an example see this notebook