Hi Erin :)
I'm testing out CURED on a new server I'm using where I have barely anything installed other than conda. I cloned the CURED repo from here, and then created the environment using cured.yml. CURED_Main.py worked fine, but CURED_FindREs.py couldn't find minimap2 when the environment was activated. I installed it via bioconda and it worked on the test case.
I noticed minimap2 is not in cured.yml. Should it be a part of this recipe? Or installed automatically with one of the listed dependencies?
Hi Erin :)
I'm testing out CURED on a new server I'm using where I have barely anything installed other than conda. I cloned the CURED repo from here, and then created the environment using cured.yml. CURED_Main.py worked fine, but CURED_FindREs.py couldn't find minimap2 when the environment was activated. I installed it via bioconda and it worked on the test case.
I noticed minimap2 is not in cured.yml. Should it be a part of this recipe? Or installed automatically with one of the listed dependencies?