docs/clarity improvement to mia::summarizeDominance #136
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| on: | |
| pull_request: | |
| branches: | |
| - devel | |
| - RELEASE_** | |
| paths: | |
| [ | |
| "**.[rR]", | |
| "**.[qrR]md", | |
| "**.[rR]markdown", | |
| "**.[rR]nw", | |
| "**.[rR]profile", | |
| ] | |
| workflow_dispatch: | |
| name: Style code | |
| permissions: read-all | |
| jobs: | |
| style: | |
| runs-on: ubuntu-latest | |
| permissions: | |
| contents: write | |
| env: | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| steps: | |
| - name: Checkout repo | |
| uses: actions/checkout@v6 | |
| with: | |
| fetch-depth: 0 | |
| - name: Setup R | |
| uses: r-lib/actions/setup-r@v2 | |
| with: | |
| use-public-rspm: true | |
| - name: Install styler and roxygen2 | |
| uses: r-lib/actions/setup-r-dependencies@v2 | |
| with: | |
| packages: any::styler, any::roxygen2 | |
| needs: styler | |
| - name: Enable styler cache | |
| run: styler::cache_activate() | |
| shell: Rscript {0} | |
| - name: Determine cache location | |
| id: styler-location | |
| run: | | |
| cat( | |
| "location=", | |
| styler::cache_info(format = "tabular")$location, | |
| "\n", | |
| file = Sys.getenv("GITHUB_OUTPUT"), | |
| append = TRUE, | |
| sep = "" | |
| ) | |
| shell: Rscript {0} | |
| - name: Cache styler | |
| uses: actions/cache@v4 | |
| with: | |
| path: ${{ steps.styler-location.outputs.location }} | |
| key: ${{ runner.os }}-styler-${{ github.sha }} | |
| restore-keys: | | |
| ${{ runner.os }}-styler- | |
| ${{ runner.os }}- | |
| - name: Style | |
| run: | | |
| # Style only R files | |
| files <- system( | |
| "git diff --name-only origin/${{ github.base_ref }}...${{ github.sha }} | egrep -i '\\.(R|Rmd|qmd|Rmarkdown|Rnw|Rprofile)$'", | |
| intern = TRUE | |
| ) | |
| if (length(files)) { | |
| styler::style_file(path = files, transformers = styler::tidyverse_style(indent_by = 4L)) | |
| } | |
| shell: Rscript {0} | |
| - name: Commit and push changes | |
| # Commit all changed files back to the repository | |
| uses: stefanzweifel/git-auto-commit-action@v7 | |
| with: | |
| commit_message: Style R code with styler |