Add interactive JavaScript diffeomorphism visualizations #5
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| name: CI | |
| on: | |
| push: | |
| branches: [ main ] | |
| pull_request: | |
| branches: [ main ] | |
| jobs: | |
| test: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| matrix: | |
| python-version: ["3.12"] | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Install dependencies | |
| run: | | |
| python -m pip install --upgrade pip | |
| pip install -e ".[test]" | |
| - name: Run pytest | |
| run: | | |
| pytest --tb=short | |
| - name: Run integration tests | |
| run: | | |
| python test_integration.py | |
| lint: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Set up Python | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: "3.11" | |
| - name: Install dependencies | |
| run: | | |
| python -m pip install --upgrade pip | |
| pip install flake8 black isort | |
| pip install -e . | |
| - name: Check code formatting with black | |
| run: | | |
| black --check --diff . | |
| continue-on-error: true | |
| - name: Check import sorting with isort | |
| run: | | |
| isort --check-only --diff . | |
| continue-on-error: true | |
| - name: Lint with flake8 | |
| run: | | |
| # stop the build if there are Python syntax errors or undefined names | |
| flake8 . --count --select=E9,F63,F7,F82 --show-source --statistics | |
| # exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide | |
| flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics | |
| continue-on-error: true | |
| diffeomorphism-tests: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Set up Python | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: "3.11" | |
| - name: Install dependencies | |
| run: | | |
| python -m pip install --upgrade pip | |
| pip install -e ".[test]" | |
| - name: Test enhanced diffeomorphism framework | |
| run: | | |
| python -c " | |
| import sys | |
| sys.path.insert(0, '.') | |
| print('Testing enhanced diffeomorphism framework...') | |
| # Test imports | |
| from thurstone import SigmoidParams, comprehensive_quality_assessment | |
| from thurstone.enhanced_cube_to_simplex import EnhancedCubeToSimplexMapping | |
| from thurstone.adaptive_special_horse import AdaptiveSpecialHorse, SpecialHorseConfig, DistributionType | |
| from thurstone.enhanced_optimization import enhanced_optimize_diffeomorphism | |
| from thurstone.pure_optimizers import pure_optimize | |
| print('✅ All imports successful') | |
| # Test basic functionality | |
| sigmoid_params = [SigmoidParams(alpha=1.2, beta=4.0, gamma=0.5) for _ in range(2)] | |
| config = SpecialHorseConfig(distribution=DistributionType.NORMAL, base_ability=0.0) | |
| special_horse = AdaptiveSpecialHorse(config) | |
| mapping = EnhancedCubeToSimplexMapping(sigmoid_params=sigmoid_params, special_horse=special_horse) | |
| # Test mapping | |
| import numpy as np | |
| test_point = np.array([0.3, 0.7]) | |
| result = mapping(test_point) | |
| assert abs(np.sum(result) - 1.0) < 1e-10, f'Simplex constraint violated: sum = {np.sum(result)}' | |
| print('✅ Basic mapping test passed') | |
| # Test quality assessment (minimal samples for speed) | |
| metrics = comprehensive_quality_assessment(mapping, | |
| symmetry_samples=20, | |
| volume_samples=5, | |
| smoothness_samples=5, | |
| coverage_samples=20, | |
| invertibility_samples=3, | |
| random_seed=42) | |
| assert metrics.symmetry_score is not None, 'Symmetry assessment failed' | |
| print('✅ Quality assessment test passed') | |
| # Test pure optimization (very minimal) | |
| def simple_objective(x): | |
| return np.sum((x - 0.5)**2) | |
| best_val, best_x = pure_optimize(simple_objective, 'HarmonySearch', n_trials=5, n_dim=2) | |
| assert best_val is not None, 'Optimization failed' | |
| print('✅ All enhanced framework tests passed!') | |
| " |